Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f19
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY333928-1|AAR13293.1| 408|Homo sapiens USP16 protein. 99 2e-20
AL163249-3|CAB90432.1| 823|Homo sapiens human ubiquitin process... 99 2e-20
AK222884-1|BAD96604.1| 823|Homo sapiens ubiquitin specific prot... 99 2e-20
AK222681-1|BAD96401.1| 823|Homo sapiens ubiquitin specific prot... 99 2e-20
AF126736-1|AAD20949.1| 823|Homo sapiens ubiquitin processing pr... 99 2e-20
BC030777-1|AAH30777.1| 822|Homo sapiens ubiquitin specific pept... 97 6e-20
AL137784-2|CAI19760.1| 182|Homo sapiens ubiquitin specific pept... 87 7e-17
AL513550-2|CAI17192.1| 772|Homo sapiens ubiquitin specific pept... 86 9e-17
AL137784-3|CAI19761.1| 772|Homo sapiens ubiquitin specific pept... 86 9e-17
AL137784-1|CAI19759.1| 265|Homo sapiens ubiquitin specific pept... 86 9e-17
AJ583819-1|CAE47746.2| 814|Homo sapiens ubiquitin specific prot... 86 9e-17
BC005991-1|AAH05991.1| 289|Homo sapiens USP45 protein protein. 85 2e-16
BC030704-1|AAH30704.1| 712|Homo sapiens ubiquitin specific pept... 45 3e-04
BC014176-1|AAH14176.1| 640|Homo sapiens ubiquitin specific pept... 43 0.001
AL365205-13|CAI13188.1| 640|Homo sapiens ubiquitin specific pep... 43 0.001
AL365205-12|CAI13186.1| 585|Homo sapiens ubiquitin specific pep... 43 0.001
AL365205-11|CAI13187.1| 688|Homo sapiens ubiquitin specific pep... 43 0.001
AJ586139-1|CAE51939.1| 688|Homo sapiens ubiquitin-specific prot... 43 0.001
BC016663-1|AAH16663.1| 828|Homo sapiens ubiquitin specific pept... 40 0.007
AK022864-1|BAB14279.1| 828|Homo sapiens protein ( Homo sapiens ... 40 0.007
AF383173-1|AAL78315.1| 911|Homo sapiens pVHL-interacting deubiq... 40 0.007
AF383172-1|AAL78314.1| 942|Homo sapiens pVHL-interacting deubiq... 40 0.007
AB029020-1|BAA83049.1| 980|Homo sapiens KIAA1097 protein protein. 40 0.007
AY332222-1|AAP93638.1| 592|Homo sapiens impedes mitogenic signa... 39 0.013
AF035620-1|AAC24200.1| 600|Homo sapiens BRCA1-associated protei... 39 0.013
AB208878-1|BAD92115.1| 632|Homo sapiens BRCA1 associated protei... 39 0.013
BT007269-1|AAP35933.1| 520|Homo sapiens ubiquitin specific prot... 38 0.030
BC107138-1|AAI07139.1| 520|Homo sapiens ubiquitin specific pept... 38 0.030
BC107137-1|AAI07138.1| 520|Homo sapiens ubiquitin specific pept... 38 0.030
BC100029-1|AAI00030.1| 393|Homo sapiens USP3 protein protein. 38 0.030
BC065300-1|AAH65300.1| 520|Homo sapiens ubiquitin specific pept... 38 0.030
BC018113-1|AAH18113.1| 520|Homo sapiens ubiquitin specific pept... 38 0.030
AY461579-1|AAT37507.1| 498|Homo sapiens UBP protein protein. 38 0.030
AF073344-1|AAD42992.1| 521|Homo sapiens ubiquitin-specific prot... 38 0.030
BC039593-1|AAH39593.1| 913|Homo sapiens ubiquitin specific pept... 36 0.091
AY074877-1|AAL79676.1| 913|Homo sapiens pVHL-interacting deubiq... 36 0.091
AL158207-6|CAC88170.1| 914|Homo sapiens ubiquitin specific pept... 36 0.091
AB023220-1|BAA76847.2| 917|Homo sapiens KIAA1003 protein protein. 36 0.091
BC069243-1|AAH69243.1| 1215|Homo sapiens HDAC6 protein protein. 34 0.37
BC013737-1|AAH13737.1| 1063|Homo sapiens HDAC6 protein protein. 34 0.37
AJ011972-1|CAA09893.1| 1215|Homo sapiens histone deacetylase-lik... 34 0.37
AF174499-1|AAF36540.1| 1066|Homo sapiens GR AF-1 specific histon... 34 0.37
AF132609-1|AAD29048.1| 1215|Homo sapiens histone deacetylase 6 p... 34 0.37
AB020708-1|BAA74924.2| 1233|Homo sapiens KIAA0901 protein protein. 34 0.37
Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein p... 32 2.0
BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene... 32 2.0
BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase ... 32 2.0
AK222852-1|BAD96572.1| 565|Homo sapiens ubiquitin specific prot... 31 4.5
BC067273-1|AAH67273.1| 565|Homo sapiens USP39 protein protein. 30 7.9
BC001384-1|AAH01384.2| 562|Homo sapiens USP39 protein protein. 30 7.9
AF353989-1|AAK49524.1| 565|Homo sapiens U4/U6.U5 tri-snRNP-asso... 30 7.9
>AY333928-1|AAR13293.1| 408|Homo sapiens USP16 protein.
Length = 408
Score = 98.7 bits (235), Expect = 2e-20
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKKQ 590
+ ++Y++KQ
Sbjct: 133 QVVDYVRKQ 141
>AL163249-3|CAB90432.1| 823|Homo sapiens human ubiquitin processing
protease, EC 3.1.2.15 protein.
Length = 823
Score = 98.7 bits (235), Expect = 2e-20
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKKQ 590
+ ++Y++KQ
Sbjct: 133 QVVDYVRKQ 141
>AK222884-1|BAD96604.1| 823|Homo sapiens ubiquitin specific
protease 16 isoform a variant protein.
Length = 823
Score = 98.7 bits (235), Expect = 2e-20
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKKQ 590
+ ++Y++KQ
Sbjct: 133 QVVDYVRKQ 141
>AK222681-1|BAD96401.1| 823|Homo sapiens ubiquitin specific
protease 16 isoform a variant protein.
Length = 823
Score = 98.7 bits (235), Expect = 2e-20
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKKQ 590
+ ++Y++KQ
Sbjct: 133 QVVDYVRKQ 141
>AF126736-1|AAD20949.1| 823|Homo sapiens ubiquitin processing
protease protein.
Length = 823
Score = 98.7 bits (235), Expect = 2e-20
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKKQ 590
+ ++Y++KQ
Sbjct: 133 QVVDYVRKQ 141
>BC030777-1|AAH30777.1| 822|Homo sapiens ubiquitin specific
peptidase 16 protein.
Length = 822
Score = 96.7 bits (230), Expect = 6e-20
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Frame = +3
Query: 210 ESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKT-EVLDPDFEEDLSLW 386
+ E ++ C H+ K ++ LKKA+ + C +CK K + + + EE S+W
Sbjct: 14 DDSSETLEPVCRHIRKGLEQGNLKKAL-VNVEWNICQDCKTDNKVKDKAEEETEEKPSVW 72
Query: 387 MCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLH 563
+CL+CG Q CGR ++ +HAL H+ TP S+ H L + W ++CY C+NEV ++ +L
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQLG 132
Query: 564 ECIEYLKK 587
+ ++Y++K
Sbjct: 133 QVVDYVRK 140
>AL137784-2|CAI19760.1| 182|Homo sapiens ubiquitin specific
peptidase 45 protein.
Length = 182
Score = 86.6 bits (205), Expect = 7e-17
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC K +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSECLK--E 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASSTVKSLPPI 629
C+ +++ KK L + +++L+K AS T PI
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKH--ASKTQTRPGPI 164
>AL513550-2|CAI17192.1| 772|Homo sapiens ubiquitin specific
peptidase 45 protein.
Length = 772
Score = 86.2 bits (204), Expect = 9e-17
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC K +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSECLK--E 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASST 608
C+ +++ KK L + +++L+K + T
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKHASKTQT 159
>AL137784-3|CAI19761.1| 772|Homo sapiens ubiquitin specific
peptidase 45 protein.
Length = 772
Score = 86.2 bits (204), Expect = 9e-17
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC K +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSECLK--E 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASST 608
C+ +++ KK L + +++L+K + T
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKHASKTQT 159
>AL137784-1|CAI19759.1| 265|Homo sapiens ubiquitin specific
peptidase 45 protein.
Length = 265
Score = 86.2 bits (204), Expect = 9e-17
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC K +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSECLK--E 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASST 608
C+ +++ KK L + +++L+K + T
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKHASKTQT 159
>AJ583819-1|CAE47746.2| 814|Homo sapiens ubiquitin specific
proteinase 45 protein.
Length = 814
Score = 86.2 bits (204), Expect = 9e-17
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC K +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSECLK--E 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASST 608
C+ +++ KK L + +++L+K + T
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKHASKTQT 159
>BC005991-1|AAH05991.1| 289|Homo sapiens USP45 protein protein.
Length = 289
Score = 85.0 bits (201), Expect = 2e-16
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 162 KKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAK 341
K KR P DE + S + V C HV+ A+ + +K+AI CSEC + +
Sbjct: 13 KAKRSKRPTVPHDEDS-SDDIAVGLTCQHVSHAISVNHVKRAIA-ENLWSVCSEC--LEE 68
Query: 342 TEVLDPDFEEDLSLWMCLRCGTQLCGR-TRNKHALNHFNTPHSDCHALAANSTTWEIYCY 518
D +W+CL+CG Q CG+ + ++H+L HF + ++ H + N +TW I+CY
Sbjct: 69 RRFYDGQLVLTSDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCY 128
Query: 519 NCNNEVTASTAKK-LHECIEYLKKQFLASST 608
C+ +++ KK L + +++L+K + T
Sbjct: 129 ECDEKLSTHCNKKVLAQIVDFLQKHASKTQT 159
>BC030704-1|AAH30704.1| 712|Homo sapiens ubiquitin specific
peptidase 44 protein.
Length = 712
Score = 44.8 bits (101), Expect = 3e-04
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTA-- 551
S+W CL C CGR +HAL HF H +A ++CY C++ V A
Sbjct: 37 SIWACLSCSHVACGRYIEEHALKHF---QESSHPVALEVNEMYVFCYLCDDYVLNDNATG 93
Query: 552 --KKLHECIEYLKKQ 590
K L + +K Q
Sbjct: 94 DLKLLRRTLSAIKSQ 108
>BC014176-1|AAH14176.1| 640|Homo sapiens ubiquitin specific
peptidase 49 protein.
Length = 640
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
S+W CL+C CGR HAL HF H LA ++CY C + V
Sbjct: 34 SVWACLKCSHVACGRYIEDHALKHF---EETGHPLAMEVRDLYVFCYLCKDYV 83
>AL365205-13|CAI13188.1| 640|Homo sapiens ubiquitin specific
peptidase 49 protein.
Length = 640
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
S+W CL+C CGR HAL HF H LA ++CY C + V
Sbjct: 34 SVWACLKCSHVACGRYIEDHALKHF---EETGHPLAMEVRDLYVFCYLCKDYV 83
>AL365205-12|CAI13186.1| 585|Homo sapiens ubiquitin specific
peptidase 49 protein.
Length = 585
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
S+W CL+C CGR HAL HF H LA ++CY C + V
Sbjct: 34 SVWACLKCSHVACGRYIEDHALKHF---EETGHPLAMEVRDLYVFCYLCKDYV 83
>AL365205-11|CAI13187.1| 688|Homo sapiens ubiquitin specific
peptidase 49 protein.
Length = 688
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
S+W CL+C CGR HAL HF H LA ++CY C + V
Sbjct: 34 SVWACLKCSHVACGRYIEDHALKHF---EETGHPLAMEVRDLYVFCYLCKDYV 83
>AJ586139-1|CAE51939.1| 688|Homo sapiens ubiquitin-specific
proteinase 49 protein.
Length = 688
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
S+W CL+C CGR HAL HF H LA ++CY C + V
Sbjct: 34 SVWACLKCSHVACGRYIEDHALKHF---EETGHPLAMEVRDLYVFCYLCKDYV 83
>BC016663-1|AAH16663.1| 828|Homo sapiens ubiquitin specific
peptidase 33 protein.
Length = 828
Score = 39.9 bits (89), Expect = 0.007
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 231 KSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCL--RCG 404
++ CPH+ ++T+ K G C +CK V P+ LW CL RC
Sbjct: 36 RNHCPHLDSVGEITKEDLIQKSLG---TCQDCK------VQGPN------LWACLENRCS 80
Query: 405 TQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
CG ++ H+ H H L N TT ++CY C+ EV
Sbjct: 81 YVGCGESQVDHSTIHSQETK---HYLTVNLTTLRVWCYACSKEV 121
>AK022864-1|BAB14279.1| 828|Homo sapiens protein ( Homo sapiens
cDNA FLJ12802 fis, clone NT2RP2002124, weakly similar to
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (EC 3.1.2.15).
).
Length = 828
Score = 39.9 bits (89), Expect = 0.007
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 231 KSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCL--RCG 404
++ CPH+ ++T+ K G C +CK V P+ LW CL RC
Sbjct: 36 RNHCPHLDSVGEITKEDLIQKSLG---TCQDCK------VQGPN------LWACLENRCS 80
Query: 405 TQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
CG ++ H+ H H L N TT ++CY C+ EV
Sbjct: 81 YVGCGESQVDHSTIHSQETK---HYLTVNLTTLRVWCYACSKEV 121
>AF383173-1|AAL78315.1| 911|Homo sapiens pVHL-interacting
deubiquitinating enzyme 1 type II protein.
Length = 911
Score = 39.9 bits (89), Expect = 0.007
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 231 KSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCL--RCG 404
++ CPH+ ++T+ K G C +CK V P+ LW CL RC
Sbjct: 5 RNHCPHLDSVGEITKEDLIQKSLG---TCQDCK------VQGPN------LWACLENRCS 49
Query: 405 TQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
CG ++ H+ H H L N TT ++CY C+ EV
Sbjct: 50 YVGCGESQVDHSTIHSQETK---HYLTVNLTTLRVWCYACSKEV 90
>AF383172-1|AAL78314.1| 942|Homo sapiens pVHL-interacting
deubiquitinating enzyme 1 type I protein.
Length = 942
Score = 39.9 bits (89), Expect = 0.007
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 231 KSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCL--RCG 404
++ CPH+ ++T+ K G C +CK V P+ LW CL RC
Sbjct: 36 RNHCPHLDSVGEITKEDLIQKSLG---TCQDCK------VQGPN------LWACLENRCS 80
Query: 405 TQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
CG ++ H+ H H L N TT ++CY C+ EV
Sbjct: 81 YVGCGESQVDHSTIHSQETK---HYLTVNLTTLRVWCYACSKEV 121
>AB029020-1|BAA83049.1| 980|Homo sapiens KIAA1097 protein protein.
Length = 980
Score = 39.9 bits (89), Expect = 0.007
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 231 KSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCL--RCG 404
++ CPH+ ++T+ K G C +CK V P+ LW CL RC
Sbjct: 74 RNHCPHLDSVGEITKEDLIQKSLG---TCQDCK------VQGPN------LWACLENRCS 118
Query: 405 TQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
CG ++ H+ H H L N TT ++CY C+ EV
Sbjct: 119 YVGCGESQVDHSTIHSQETK---HYLTVNLTTLRVWCYACSKEV 159
>AY332222-1|AAP93638.1| 592|Homo sapiens impedes mitogenic signal
propagation protein.
Length = 592
Score = 39.1 bits (87), Expect = 0.013
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKK 557
+LW+CL CG CGR ++HA HF H A T ++ Y +N V A K
Sbjct: 325 NLWICLICGHIGCGRYVSRHAYKHFEETQ---HTYAMQLTNHRVWDYAGDNYVHRLVASK 381
>AF035620-1|AAC24200.1| 600|Homo sapiens BRCA1-associated protein 2
protein.
Length = 600
Score = 39.1 bits (87), Expect = 0.013
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKK 557
+LW+CL CG CGR ++HA HF H A T ++ Y +N V A K
Sbjct: 325 NLWICLICGHIGCGRYVSRHAYKHFEETQ---HTYAMQLTNHRVWDYAGDNYVHRLVASK 381
>AB208878-1|BAD92115.1| 632|Homo sapiens BRCA1 associated protein
variant protein.
Length = 632
Score = 39.1 bits (87), Expect = 0.013
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKK 557
+LW+CL CG CGR ++HA HF H A T ++ Y +N V A K
Sbjct: 365 NLWICLICGHIGCGRYVSRHAYKHFEETQ---HTYAMQLTNHRVWDYAGDNYVHRLVASK 421
>BT007269-1|AAP35933.1| 520|Homo sapiens ubiquitin specific
protease 3 protein.
Length = 520
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC107138-1|AAI07139.1| 520|Homo sapiens ubiquitin specific
peptidase 3 protein.
Length = 520
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC107137-1|AAI07138.1| 520|Homo sapiens ubiquitin specific
peptidase 3 protein.
Length = 520
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC100029-1|AAI00030.1| 393|Homo sapiens USP3 protein protein.
Length = 393
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC065300-1|AAH65300.1| 520|Homo sapiens ubiquitin specific
peptidase 3 protein.
Length = 520
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC018113-1|AAH18113.1| 520|Homo sapiens ubiquitin specific
peptidase 3 protein.
Length = 520
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>AY461579-1|AAT37507.1| 498|Homo sapiens UBP protein protein.
Length = 498
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 15 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 74
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 75 RCDDFVVNDT 84
>AF073344-1|AAD42992.1| 521|Homo sapiens ubiquitin-specific
protease 3 protein.
Length = 521
Score = 37.9 bits (84), Expect = 0.030
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Frame = +3
Query: 378 SLWMCLRCGTQLCGRTRNKHALNHFN------TPHSDC-------HALAANSTTWEIYCY 518
S W+CL C + CGR N HA H+ T H H + + +++ YCY
Sbjct: 37 SPWVCLTCSSVHCGRYVNGHAKKHYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCY 96
Query: 519 NCNNEVTAST 548
C++ V T
Sbjct: 97 RCDDFVVNDT 106
>BC039593-1|AAH39593.1| 913|Homo sapiens ubiquitin specific
peptidase 20 protein.
Length = 913
Score = 36.3 bits (80), Expect = 0.091
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 SLWMCLR--CGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
+LW CL+ C CG + H+ H H L N TT+ ++CY C EV
Sbjct: 39 NLWACLQVACPYVGCGESFADHSTIHAQAKK---HNLTVNLTTFRLWCYACEKEV 90
>AY074877-1|AAL79676.1| 913|Homo sapiens pVHL-interacting
deubiquitinating enzyme 2 protein.
Length = 913
Score = 36.3 bits (80), Expect = 0.091
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 SLWMCLR--CGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
+LW CL+ C CG + H+ H H L N TT+ ++CY C EV
Sbjct: 39 NLWACLQVACPYVGCGESFADHSTIHAQAKK---HNLTVNLTTFRLWCYACEKEV 90
>AL158207-6|CAC88170.1| 914|Homo sapiens ubiquitin specific
peptidase 20 protein.
Length = 914
Score = 36.3 bits (80), Expect = 0.091
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 SLWMCLR--CGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
+LW CL+ C CG + H+ H H L N TT+ ++CY C EV
Sbjct: 39 NLWACLQVACPYVGCGESFADHSTIHAQAKK---HNLTVNLTTFRLWCYACEKEV 90
>AB023220-1|BAA76847.2| 917|Homo sapiens KIAA1003 protein protein.
Length = 917
Score = 36.3 bits (80), Expect = 0.091
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 378 SLWMCLR--CGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEV 536
+LW CL+ C CG + H+ H H L N TT+ ++CY C EV
Sbjct: 43 NLWACLQVACPYVGCGESFADHSTIHAQAKK---HNLTVNLTTFRLWCYACEKEV 94
>BC069243-1|AAH69243.1| 1215|Homo sapiens HDAC6 protein protein.
Length = 1215
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 1143 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1186
>BC013737-1|AAH13737.1| 1063|Homo sapiens HDAC6 protein protein.
Length = 1063
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 991 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1034
>AJ011972-1|CAA09893.1| 1215|Homo sapiens histone deacetylase-like
protein protein.
Length = 1215
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 1143 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1186
>AF174499-1|AAF36540.1| 1066|Homo sapiens GR AF-1 specific histone
deacetylase protein.
Length = 1066
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 994 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1037
>AF132609-1|AAD29048.1| 1215|Homo sapiens histone deacetylase 6
protein.
Length = 1215
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 1143 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1186
>AB020708-1|BAA74924.2| 1233|Homo sapiens KIAA0901 protein protein.
Length = 1233
Score = 34.3 bits (75), Expect = 0.37
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 384 WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNC 524
W+CL C CGR N H L H + H L + +CY C
Sbjct: 1161 WVCLSCYQVYCGRYINGHMLQHHG---NSGHPLVLSYIDLSAWCYYC 1204
>Y18314-1|CAB48398.1| 797|Homo sapiens paraplegin-like protein
protein.
Length = 797
Score = 31.9 bits (69), Expect = 2.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 147 QDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIK--IGGFEKECS 320
+D + +K PG +G + C E A H++ +++ ++AI+ IGG EK
Sbjct: 502 KDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEK--- 558
Query: 321 ECKKVAKTEVLDPD 362
KT+VL P+
Sbjct: 559 ------KTQVLQPE 566
>BC065016-1|AAH65016.1| 797|Homo sapiens AFG3 ATPase family gene
3-like 2 (yeast) protein.
Length = 797
Score = 31.9 bits (69), Expect = 2.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 147 QDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIK--IGGFEKECS 320
+D + +K PG +G + C E A H++ +++ ++AI+ IGG EK
Sbjct: 502 KDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEK--- 558
Query: 321 ECKKVAKTEVLDPD 362
KT+VL P+
Sbjct: 559 ------KTQVLQPE 566
>BC024282-1|AAH24282.1| 812|Homo sapiens Similar to AFG3 ATPase
family gene 3-like 2 (yeast) protein.
Length = 812
Score = 31.9 bits (69), Expect = 2.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 147 QDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIK--IGGFEKECS 320
+D + +K PG +G + C E A H++ +++ ++AI+ IGG EK
Sbjct: 517 KDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEK--- 573
Query: 321 ECKKVAKTEVLDPD 362
KT+VL P+
Sbjct: 574 ------KTQVLQPE 581
>AK222852-1|BAD96572.1| 565|Homo sapiens ubiquitin specific
protease 39 variant protein.
Length = 565
Score = 30.7 bits (66), Expect = 4.5
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +3
Query: 348 VLDPDFEEDLSL-------WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWE 506
VLD DFE+ S+ ++CL CG GR HA H + S H + N T +
Sbjct: 115 VLDFDFEKLCSISLSHINAYVCLVCGKYFQGRGLKSHAYIH-SVQFS--HHVFLNLHTLK 171
Query: 507 IYCYNCNNEVTASTAKKL 560
YC N E+ S+ + +
Sbjct: 172 FYCLPDNYEIIDSSLEDI 189
>BC067273-1|AAH67273.1| 565|Homo sapiens USP39 protein protein.
Length = 565
Score = 29.9 bits (64), Expect = 7.9
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +3
Query: 348 VLDPDFEEDLSL-------WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWE 506
VLD DFE+ S+ + CL CG GR HA H + S H + N T +
Sbjct: 115 VLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIH-SVQFS--HHVFLNLHTLK 171
Query: 507 IYCYNCNNEVTASTAKKL 560
YC N E+ S+ + +
Sbjct: 172 FYCLPDNYEIIDSSLEDI 189
>BC001384-1|AAH01384.2| 562|Homo sapiens USP39 protein protein.
Length = 562
Score = 29.9 bits (64), Expect = 7.9
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +3
Query: 348 VLDPDFEEDLSL-------WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWE 506
VLD DFE+ S+ + CL CG GR HA H + S H + N T +
Sbjct: 112 VLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIH-SVQFS--HHVFLNLHTLK 168
Query: 507 IYCYNCNNEVTASTAKKL 560
YC N E+ S+ + +
Sbjct: 169 FYCLPDNYEIIDSSLEDI 186
>AF353989-1|AAK49524.1| 565|Homo sapiens U4/U6.U5
tri-snRNP-associated 65 kDa protein protein.
Length = 565
Score = 29.9 bits (64), Expect = 7.9
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +3
Query: 348 VLDPDFEEDLSL-------WMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTWE 506
VLD DFE+ S+ + CL CG GR HA H + S H + N T +
Sbjct: 115 VLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIH-SVQFS--HHVFLNLHTLK 171
Query: 507 IYCYNCNNEVTASTAKKL 560
YC N E+ S+ + +
Sbjct: 172 FYCLPDNYEIIDSSLEDI 189
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,261,853
Number of Sequences: 237096
Number of extensions: 1549438
Number of successful extensions: 4064
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4031
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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