Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f18
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   1.8  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   4.2  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   4.2  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.6  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.6  

>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 478 ISIRPLTISKIVSFSRQLANPDKSSIGTR 392
           +SI+P   ++IV FSR  A+PD+     R
Sbjct: 154 LSIQPRKANRIVDFSRIKASPDRKKFEPR 182


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 309 PEALQR---KLYFLLEQLQDMARELPPKYQMRVPIELL 413
           PE++Q    ++Y+ LE L D +     K   R+PIEL+
Sbjct: 206 PESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELI 243


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 396 VPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKHLFQQRLQVINKHTK 542
           + +++LSGL     N  +F+++  L+E +     HL    +      TK
Sbjct: 363 ITLQILSGLTGIRFNKPLFKLLGSLVEHRSSVPNHLSHMSITRFEDKTK 411


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273 ILSSNMELQEPTPEALQRKLYF--LLEQLQDMARELPPKYQMRVPIELLSGLANC 431
           ++S+ +E Q+ T   L RK  F   +E+  +   +LP K+  RVP  LLS  + C
Sbjct: 407 MVSALVEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVP--LLSNRSLC 459


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +3

Query: 342 LEQLQDMARELPPKYQMRVPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKH 500
           + Q++D   +L         + + +GLA  L+  T     + L+++QH+   H
Sbjct: 314 VNQIRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLVSH 366


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 253  NTIIVFLYYLQIWNYKSLPRKLYKENY 333
            + +I+F+  L +W  K+L RKL   +Y
Sbjct: 1002 SALILFISLLPVWCGKALKRKLKPSSY 1028


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 265 VFLYYLQIWNYKSLPRKLYKENY 333
           +F+YY++   YKSL R  +  +Y
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAPHY 421


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 328 NYISY*NSYKIWPENCLLNIK 390
           NYI++ N +  W  NC+L  K
Sbjct: 792 NYINFSNCFTYWIINCILEKK 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,589
Number of Sequences: 5004
Number of extensions: 38264
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)