Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f18
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1695 + 35433975-35437040 35 0.037
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 30 1.4
12_01_0043 + 344084-344452,346672-347546,347635-348145 29 2.4
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 29 2.4
07_03_0394 - 17633753-17636788 29 3.2
06_03_0397 + 20370146-20370256,20371223-20371312,20371411-203714... 29 3.2
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 28 4.2
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 27 9.8
02_01_0787 - 5907355-5907457,5908328-5908461,5908542-5908628,590... 27 9.8
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 35.1 bits (77), Expect = 0.037
Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 226 IACQKDLLSNTIIVFLYYLQIWNYKSLPRK-LYKENYISY*NSYKIWPE 369
+ C +L+ T+ ++L+ + +WNY+ PRK + + +S+ + ++ P+
Sbjct: 856 LVCYPELILPTVFLYLFVIGVWNYRRRPRKPAHMDTALSHAEAEQVHPD 904
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -1
Query: 424 ANPDKSSIGTRI*YLGGSSLAISCNCSNKKYNFLCKASGVGSCNSIFEDNIKKQLLY 254
ANPD S+ RI Y G+ IS +C NKK + + +S+ + K++ Y
Sbjct: 354 ANPDSSNNKIRICYECGTPGHISSSCPNKKASEAISDEKKANVDSVTASSKKRRTCY 410
>12_01_0043 + 344084-344452,346672-347546,347635-348145
Length = 584
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -1
Query: 538 VCLLITCSLCW-NKCFSVTC*ISI----RPLTISKIVSFS 434
+CL+ CS+CW N V C S RPL +S +SF+
Sbjct: 127 ICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFN 166
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -1
Query: 538 VCLLITCSLCW-NKCFSVTC*ISI----RPLTISKIVSFS 434
+CL+ CS+CW N V C S RPL +S +SF+
Sbjct: 146 ICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFN 185
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 241 DLLSNTIIVFLYYLQIWNYKSLPR 312
DL+ TI ++++ + +WNY+ PR
Sbjct: 853 DLILPTIFLYMFLIGLWNYRFRPR 876
>06_03_0397 +
20370146-20370256,20371223-20371312,20371411-20371470,
20371553-20371825,20371917-20371991,20372074-20372130,
20372820-20372960,20373066-20373116,20373194-20373289,
20373482-20373565,20375739-20375840,20376260-20376331
Length = 403
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 249 IKYNNCFFILSSNMEL-QEPTPEALQRKLYFLLEQLQDMARELPPKYQMRVPIELLSGLA 425
I +CFF +S EL E + LY +L+ +DM + +P Y ++ GLA
Sbjct: 125 ISLKHCFFSTTSRDELFLNLVMEFVPESLYRVLKHYKDMKQRMPLIYVKLYMYQIFRGLA 184
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 312 EALQRKLYFLLEQLQDMARELPPKYQMRVPIELLSGL 422
E LY +L + AR L K ++PIELL+G+
Sbjct: 413 EVYSVSLYQILPWISSQARNLLKKAGEKIPIELLNGI 449
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 369 ELPPKYQMRVPIELLSGLANCLLNDTIFE-IVKGLMEIQHVTEKHLFQ 509
E PP + P++L++ L + + + +VKGL E EKH Q
Sbjct: 8 EAPPAPVLGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQ 55
>02_01_0787 -
5907355-5907457,5908328-5908461,5908542-5908628,
5908733-5908924,5909036-5909188
Length = 222
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 369 ELPPKYQMRVPIELLSGLANCLLNDTIFEIVKGLMEIQHVTEKHLFQQRLQV 524
E PP+ + + P + + N +LN + V+G EI V + Q RLQV
Sbjct: 96 EHPPRIKFKRPDKTARHIMN-ILNKEAVDKVRGEREIPDVQPGCIIQMRLQV 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,858
Number of Sequences: 37544
Number of extensions: 190654
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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