Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f18
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical ...    31   0.72 
AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical
           protein K03E5.3 protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = +3

Query: 222 SNCLSKGSFIK---YNNC---FFILSSNMELQEPTPEALQRKLYFLLEQLQDMARELPPK 383
           S CL + S IK   ++N    F I+ +N +L     E + R L  LLE L+     LPP 
Sbjct: 87  STCLREISCIKDLQHDNIVTLFDIIYANSKLYMVF-EFIDRDLKNLLEMLEPTNSVLPPN 145

Query: 384 YQMRVPIELLSGLANCLLNDTIFEIVK 464
           Y      +LLS L+ C L   +   +K
Sbjct: 146 YVKSFMWQLLSALSYCHLRRIVHRDLK 172


>AC006629-8|ABC48258.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.9 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 283 EDNIKKQLLYLIKDPFDRQFEHYLLI 206
           E  +K+++L+L++ PFDR   + LLI
Sbjct: 170 EPFLKREILHLVEAPFDRSNSYRLLI 195


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 367 LAISCN-CSNKKYNFLCKASGVGSCNSIFEDNIKKQLLYLIKDPFDRQFEHYL 212
           L+I C  C N+   +  +    G+C S F  ++  ++ Y  KD   R    YL
Sbjct: 9   LSIPCEVCKNQSNGYHFEVLSCGACASFFRRSVVSKIKYQCKDGKKRCQIRYL 61


>Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK455.3 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 538 VCLLITCSLCW---NKCFSVTC*ISIRPLTIS 452
           +C+LIT +LCW   N CF ++      PL IS
Sbjct: 285 LCVLITWALCWLPLNVCFFMSGLAYPEPLVIS 316


>AC006629-10|ABC48257.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.8 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 283 EDNIKKQLLYLIKDPFDRQFEHYLLI 206
           E  +K + LYL++ PFDR   + LLI
Sbjct: 170 EPFLKSERLYLVEAPFDRPNSYRLLI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,066
Number of Sequences: 27780
Number of extensions: 206793
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)