Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f16
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 159 1e-39
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 0.94
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 30 1.6
05_06_0070 + 25342965-25343882,25343968-25344618 28 5.0
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 6.6
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 159 bits (387), Expect = 1e-39
Identities = 81/106 (76%), Positives = 89/106 (83%)
Frame = +3
Query: 225 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 404
DE LYPIA+LIDELKNED+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E DEDEVL
Sbjct: 5 DEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDEDEVL 64
Query: 405 LALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASL 542
LA+AE+LG FI VGG E AH LLPPLETL VEET VRDKAV SL
Sbjct: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESL 110
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +3
Query: 222 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 398
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEQLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 399 VLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQ 572
V LA+ E + + +G G F L + +RD A +L+ +AE P+
Sbjct: 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPE 470
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 222 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEV 401
T++ L PI L + D QLR ++ + +G + L+P+L + + DE EV
Sbjct: 742 TNDFLLPILPAF--LNDRDEQLRAVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEV 799
Query: 402 LL 407
+L
Sbjct: 800 VL 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +3
Query: 228 ESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLL 407
+S+Y I + + + +R ++ + + G +T L+P L + D DE L
Sbjct: 703 KSIYEIVQELVMGQKQTPNVRRALLQDIGYLCYFFGHRQTNDFLLPILPAFLNDRDEQLR 762
Query: 408 AL-AEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASL 542
A+ Q+ +G LLP LE + E VV K + L
Sbjct: 763 AVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEVVLVKVLDCL 808
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.9 bits (64), Expect = 1.6
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +3
Query: 219 GTDESLYPIAV--LIDELKNEDVQL-RLNSIKKLSTIALALGVERTKSELIPFLTETIYD 389
G E ++P V L+D LK++ + R + + LS + ALG + +++P +
Sbjct: 1609 GMGEEIFPDLVPWLLDTLKSDSSNVERSGAAQGLSEVLAALGKDYF-DQILPDIIRNCSH 1667
Query: 390 EDEVLLALAEQLGNFINLVGGGEFAHCL---LPPLETLAAVEETVVRDKAVASLRAVAEH 560
+ + L ++ GG F + L LP + A E VRD A+++ EH
Sbjct: 1668 QKASVRDGHLTLFRYLPRSLGGVFQNYLQIVLPAILDGLADENESVRDAALSAGHVFVEH 1727
Query: 561 HSPQALEGTLCAI 599
++ +L L AI
Sbjct: 1728 YATSSLPLLLPAI 1740
>05_06_0070 + 25342965-25343882,25343968-25344618
Length = 522
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 387 DEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETL---AAVEETVVRDKAVAS 539
DED V + EQLG L + A L PP+ L A+E+TV+ VA+
Sbjct: 353 DEDTVAVVREEQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAA 406
>03_02_0774 + 11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 599 NGTKCSLECLGAMVLGNSTERGHCLVSDYCFFHCC*CL*WRKETV 465
NG KC AM L NST C S+YCF+ C L + TV
Sbjct: 1061 NG-KCQKGPSAAMCL-NSTMAAICKASEYCFWPSCALLHQQYSTV 1103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,882
Number of Sequences: 37544
Number of extensions: 245313
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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