Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f16
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   189   1e-48
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    29   1.9  
Z68159-8|CAD01080.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    27   7.9  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  189 bits (461), Expect = 1e-48
 Identities = 94/127 (74%), Positives = 107/127 (84%)
 Frame = +3

Query: 201 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 380
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+T
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query: 381 IYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 560
           IYDEDEVLL LAEQLGNF  LVGG +  HCLL PLE LA VEETVVRDKAV SLR +A+ 
Sbjct: 61  IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query: 561 HSPQALE 581
           HS  +LE
Sbjct: 121 HSSASLE 127


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 435 INLVGGGEFAHCLLPPLETLAAVEETVV-RDKAVASLRAVAEHHSPQALEGTLC 593
           +N +G  EF  C+LPP+E     +  V+   + V  +  +A + + +AL   LC
Sbjct: 196 VNGMGAAEFLSCVLPPMEKSGGGQIVVLSSSQGVRPIPMLAAYCATKALMTFLC 249


>Z68159-8|CAD01080.1|  310|Caenorhabditis elegans Hypothetical
           protein C33D9.9 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +3

Query: 198 RMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIK-------KLSTIALALGVERTKSE 356
           R+ +S+     S YPIA + + LKNE++Q    ++K       KL+     L + R K  
Sbjct: 235 RVISSEELEASSSYPIASMKNCLKNEEIQKMQKALKEKDEQISKLTEQLQGLLINRDKET 294

Query: 357 LIPFLTETIYDED 395
            +  L +  YD D
Sbjct: 295 KVEDLQQFEYDGD 307


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 450 GGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 560
           GG+ A+C  P   ++ AV   V  ++ VA  R V  H
Sbjct: 262 GGDAAYCPCPARSSVMAVNRRVAVNRNVARNRVVVRH 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,364
Number of Sequences: 27780
Number of extensions: 216261
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)