Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f15
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    31   0.19 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    30   0.33 
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    27   1.8  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    26   4.0  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   5.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.3  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   7.1  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   7.1  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   9.3  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   9.3  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.3  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.3  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +1

Query: 268 ETIDLSWYESSNSILKMTGPEKIYEELTAMQPLSYMAVDVCSKLVGFEPLARTLRQDYDV 447
           E  +L WYE    +LK    +K     T  + LS  A+D+C KL+   P  R     ++ 
Sbjct: 502 EVKNLPWYE----LLKPVEEKKSRFVETFKEILSPAAIDLCQKLLALNPFCRP--SAHET 555

Query: 448 ILVENFNSD 474
           ++ E F S+
Sbjct: 556 LMHEYFTSE 564


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +1

Query: 88  AKILGLFPHTGKSHQMVFDPLLR------RLAEKGHHVTVVSFFPVKNPPANYTNISLES 249
           A++L  F    K+H+++ DP LR      RL E G    V+ F P K+ P N  +IS + 
Sbjct: 49  AEVLPQFQLIQKAHEVLKDPKLRELFDQRRLLEAGRPDGVLRFRPKKSGPKN--DISTKV 106

Query: 250 LAKLGV 267
            +K+ V
Sbjct: 107 ASKVSV 112


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 72  TRSRVRENIRPFPAHRQKPSNGVRPFIEKIGGERPPCYCSILFSRQKSPSKLHEHQPR 245
           +R R  ++ R F  H Q+PSN     I+ IG        SI +  +    K   +QP+
Sbjct: 140 SRLRAEQHKRRFGVHSQQPSNS----IQTIGYSNSDAIKSIAWKEKDKSIKTWNYQPK 193


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 223 NYTNISLESLAKLGVETIDLSWYESSNSIL--KMTGPEKIYEELTAMQPLSYMAVDVCSK 396
           N +   L+S  K+ ++TIDL  Y+SS S +  +  GP   Y ++  +   + +   + SK
Sbjct: 181 NLSRTDLKSSLKIILQTIDLFKYDSSFSSIYFRKDGP---YHKVEKLLKSANIRSSLNSK 237

Query: 397 LVG-FEPLARTLRQDYDVILVENFNSDCML 483
               F  L   L +DY   L    +S CML
Sbjct: 238 TFNDFRTLFLLLIRDYS--LFHGNSSHCML 265


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 499 YGQKAPIIALLSSSLMDWSPSRIGVSDNPSYVPIVTSTFTTPMS 630
           YG +A + +   S+L+  SP+  G S+ P+Y P   +  ++ +S
Sbjct: 481 YGSRAALSSRSQSNLL--SPTSTGASNQPNYSPFADNPSSSNVS 522



 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 532 SSSLMDWSPSRIGVSDNPSYVPIVTSTFTTPMS 630
           SSS M  S S   +S + S  P+ +S+FT+P S
Sbjct: 44  SSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 219 WGIFDGKKGYYSNMVAFLRQ 160
           WGIFDG  G+  N   FLRQ
Sbjct: 117 WGIFDGHSGW--NTSLFLRQ 134


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 433 QDYDVILVENFNSDCMLG--LAHIYGQKAPIIALLSSSLMDWSPSRIGVSDNPSYVP 597
           ++Y   L+  ++    L   L+H YG +AP+I  L S   D++   + ++D   + P
Sbjct: 489 KNYSARLIHEYHIPLRLAKHLSHNYGSRAPLILELYSK-TDFNKLPVTLADKEVFAP 544


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 226 YTNISLESLAKLGVETIDLSWYESSNSILKMTGPEKIYE 342
           Y +I L +  KLG+ T+  S Y S N     + PE++ E
Sbjct: 297 YWSIYLSNCKKLGISTLPPSNYLSPNRAELESTPEQLLE 335


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 202 PVKNPPANYTNISLESLAKLGVETIDLSWYESS 300
           P+      + N  L S +KLG+ET+   WY  S
Sbjct: 783 PLSPNHGTFGNDGLYSESKLGLETLFNRWYSES 815


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 592 RMMDYLIPQYDSETNPLTSLIIRL*LALSDRI-YVPGPAYSHC*NSPLK 449
           R  D LIP  D   +    ++  L   L + + YV GP Y+H   SPL+
Sbjct: 46  RTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLE 94


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 538 SLMDWSPSRIGVSDNP 585
           S+ D+S SRIG+S+NP
Sbjct: 152 SIQDFSLSRIGLSNNP 167


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +1

Query: 106 FPHTGKSHQMVFDPLLRRLAEKGHHVTVVSFFP--VKNPPANYTNISLESL 252
           +P  G  H + F P    LA  GH  +V   +P   + PP     + L  L
Sbjct: 202 YPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -2

Query: 479 IQSLLKFSTKMTS*SCLKVRAKGSKPTNLEHTST-AI*DSGCIAVNSSYIFSGPVILSME 303
           + S   FS++ +S S +   +  +  + L   ST +I DS C + N   +     IL ++
Sbjct: 9   LPSRFTFSSESSSSSSILFASTLASESRLSDLSTGSIRDSDCFSFNVHELNQSDEILEID 68

Query: 302 FELSYQDKSIVSTPNLAKLSRLM 234
           F    + K         KLS+++
Sbjct: 69  FRFFSKKKKNEHFSKRRKLSKVL 91


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
 Frame = +1

Query: 184 TVVSFFPVKNPPANYTNISLESLAKLGVETIDLSWYESSNSILK--------MTGPEKIY 339
           +V + FP     A +  IS+    +L ++  + +  E +NS L         M  P ++Y
Sbjct: 44  SVTNVFPNAFSDAEFEQISMP---ELNLKRFNPTTLEENNSDLSDMSSWDYMMNVPIRVY 100

Query: 340 EELTAMQPLSYMAVDVCSKLVGFEPLA 420
            +   M P S   +   S  + F+PLA
Sbjct: 101 NDADTMDPFSLDTIPDSSMDMPFDPLA 127


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 626 IGVVNVEVTIGTYDGLSDTPIRLGDQSINEL 534
           +G  NV++T   +D + DTP ++   +IN+L
Sbjct: 373 VGSKNVDLTESAFDSIPDTPTKI-ITNINKL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,824
Number of Sequences: 5004
Number of extensions: 61005
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)