Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f15
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 202 PVKNPPANYTNISLESLAKLGVETIDLSWYESSNSIL 312
           P+ N       I  E L   G+E+ID++    + S L
Sbjct: 465 PINNCEIKAGEIDAERLNNQGIESIDIAANAPNESFL 501


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 157 RLAEKGHHVTVVSFFPVKNPPANYTNISLESLAKLGVETIDLS 285
           RL    HH+ V        PP +  + +  S+ KL + T  +S
Sbjct: 336 RLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMS 378


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 429 EAGLRCHFSGE 461
           EA +RCH +GE
Sbjct: 418 EANIRCHVAGE 428


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 123 FACVREKA*YFRGRDCV 73
           F C R +  YF GRD V
Sbjct: 295 FLCERHQKRYFFGRDSV 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,354
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)