Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f14
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 29 0.46
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 1.4
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 4.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 7.5
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 25 7.5
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 9.9
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 25 9.9
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 11 N*QTWFSIIWCFLNKLKMFS*SNRSTDPHN 100
N + WF+II+C NKLK + + D HN
Sbjct: 233 NEKRWFTIIYCADNKLKAMHMISPTLDAHN 262
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 559 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 467
K + +Q+P H PH+H + + PP D I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 553 HSNQRPPQHRPHEHSRPVLTPP 488
H + RPP H PH H PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 589 HVAWHEQRQVKQHSNQRPPQHRPHEHSRP 503
H +HE+RQ + PP R E S P
Sbjct: 28 HTGFHEKRQGASSESLIPPAQRSSEESMP 56
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 532 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 401
Q PH HS +++ D+ IA+P + V L+ H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 574 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 488
+ R+ ++ PPQ E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 236 ERLPHAPAGPALRGVHAPAGRVRPQMPLDWKL 331
+++P P P +H+P +V Q DW++
Sbjct: 220 KKVPRGPPSPPPPVLHSPPRKVSAQEQQDWQI 251
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 292 SRCMHTAEGGACGRVRQALCTTHGARPAATSDV-TSTCSNI 173
S C H A G++R T HG RP +T DV TS S++
Sbjct: 220 SLCFHFATITHYGQLR-FYDTKHGRRPVSTFDVSTSPLSHV 259
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -1
Query: 78 FDYENIFNLLRKHQIMLNHVCQFEKS 1
+ YE++F + +H + + +CQ +S
Sbjct: 792 YAYEHMFQFIPRHTLAIQAICQAHRS 817
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 159 NRERVMLLQVLVTSLVAAGLAPCVVQSACRTRPQAPPSAVCM 284
+RE L+Q + ++A G A V + RPQ + +C+
Sbjct: 110 DREMYQLVQKFLAIIIAFGQATAYVLTGMYGRPQDLGAGICL 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,570
Number of Sequences: 5004
Number of extensions: 32741
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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