Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f13
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   236   2e-63
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   212   3e-56
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   4.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   5.6  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   5.6  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   7.4  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   9.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.8  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.8  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.8  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   9.8  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  236 bits (577), Expect = 2e-63
 Identities = 107/179 (59%), Positives = 131/179 (73%)
 Frame = +2

Query: 86  YIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISL 265
           Y   E G+  T DY+V+ +  G PIS  HDIPL+A+  + ++NMVVE+PRWT AK+EI+ 
Sbjct: 4   YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITK 63

Query: 266 GEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVDV 445
              LNPIKQD KKG LRFV N FPH GYIWNYGA PQT+E+PN V P+T A+GD+DP+DV
Sbjct: 64  EATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDV 123

Query: 446 IEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQDVETLFPG 622
            EIGE     G V  VK+LG +AL+DEGETDWK+I ID  DP A KLND++DVE   PG
Sbjct: 124 CEIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPG 182



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 621 GLLRATVEWFRLYKV 665
           GL+RAT EWFR+YK+
Sbjct: 182 GLIRATNEWFRIYKI 196


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  212 bits (518), Expect = 3e-56
 Identities = 98/187 (52%), Positives = 125/187 (66%)
 Frame = +2

Query: 59  ATLKTQVRMYIVEERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRW 238
           A+L   +  +  +  G   TPD+RV+      PIS  HD+PL +DK     NMV E+PRW
Sbjct: 2   ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDT--FNMVTEIPRW 59

Query: 239 TNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGA 418
           T AK EISL    +PIKQD+K G LR+V N FP+ G+IWNYGALPQTWE+PN +D  T  
Sbjct: 60  TQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTKM 119

Query: 419 RGDNDPVDVIEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEKLNDVQ 598
           +GD DP+DV EIG  +   G +  VK+LG L LID+GETDWK++AID  DP A+ LND+ 
Sbjct: 120 KGDGDPLDVCEIGGSIGYIGQIKQVKVLGALGLIDQGETDWKILAIDINDPRAKLLNDIS 179

Query: 599 DVETLFP 619
           DV+ L P
Sbjct: 180 DVQNLMP 186


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 101 RGSPYTPDY--RVFFKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 274
           RG P T +    V+ K+  GP  P     +     + ++++V+E  +WTNA   + +  +
Sbjct: 301 RGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCPNELVIDLVIENHKWTNAPKPVCVIHS 360

Query: 275 LNP 283
           + P
Sbjct: 361 VTP 363


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 5   RLCAVKEPTRVTCSINSTATLKTQVRMYIVEERGSPYTPD 124
           R C   +  R  C I   +T K+   +YI  E   P T +
Sbjct: 67  RACETMKTLRHPCIIKYLSTYKSSTHLYIATETVRPVTTE 106


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +2

Query: 404 PDTGARGDNDPVDVIEIGERVASRGDVYPVKILGTLALIDEGETDWKLIAIDSRDPNAEK 583
           P   A     P+    +     S    YP +I+ T  + +  E DW    + S  PN E 
Sbjct: 218 PSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIPTSNVPNREEKDW---TVTSNVPNKEP 274

Query: 584 LNDVQDVETL 613
              VQ + TL
Sbjct: 275 PISVQLLHTL 284


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 137 FKDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEALNPIKQDVKK 304
           F+D+ G +  M +  L+  +  +++    +   WT  ++ + L  AL  IKQ VK+
Sbjct: 276 FRDDNGILIEMKE--LFTHQIPKMLRPYFKPNDWTPNRLLVVLEHALEWIKQTVKQ 329


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 152 GPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEA 274
           G ISP +D  LW +   + +  +VE     N K+ I L  A
Sbjct: 94  GRISP-NDSGLWMESQMKPLRRIVEFAHSQNQKIGIQLAHA 133


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 536 DWKLIAIDSRDPNAEKLNDVQDVETLFPGP 625
           D  LI + + + N   LND+ D +++F GP
Sbjct: 601 DENLIQLFNDESNFFNLNDLGDFQSIFGGP 630


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 330 TLFTNRRLPFFTSCLIGLRASPR-LISIFALV 238
           T FT R + FF   ++G  ASP     +F+L+
Sbjct: 67  TNFTLRGIDFFVDTIVGFPASPETTFKVFSLL 98


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 546 SFQSVSPSSMRASVPRIFTG*TSPRLATRSPISMTSTGSLSPLAPVS 406
           SF    P      VPR  +    P L +RS   +  + SLSP+A V+
Sbjct: 86  SFTHSQPQIQAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVA 132


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 327 LFTNRRLPFFTSCLIGLRASPRL 259
           L+T   L   T+CLI LR +P L
Sbjct: 157 LYTKSHLMLATACLIALRHNPSL 179


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 140 KDEGGPISPMHDIPLWADKAQRLVNMVVEVPRWTNAKMEISLGEALNPIKQDVKKGNLRF 319
           +DEG  +  +H   +  D AQ +VN   E        +++   +AL P K       L+ 
Sbjct: 177 QDEGFIVISIHPGAVRTDSAQEIVNQHAEK---KPEILDLFAKQALTPEKS--ASDMLKV 231

Query: 320 VNNVFP-HRGYIWNY 361
           V+N+ P + G  +NY
Sbjct: 232 VDNLKPENNGLFYNY 246


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 224 EVPRWTNAKMEISLGEALNPIKQDVKKGNLRFVNN 328
           ++ +W++ K  I+ G  L P+ ++ KK  +   NN
Sbjct: 430 QIDKWSDGKALIATGSPLPPLNRNGKKYVISQCNN 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,431
Number of Sequences: 5004
Number of extensions: 53250
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)