Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f12
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    27   2.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   3.5  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   3.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.5  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   4.7  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   6.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.2  

>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +1

Query: 106 ALMLSDSLVFESDSNYSQYS*LPRLTHPSNRNAFCFTE-ETDATRRCRSIQLPRIWPNDY 282
           AL++  +L+  + S++ Q     +L    +R   C T  E     R R+I + ++W NDY
Sbjct: 69  ALVILQALIENAGSHFLQNFSDEKL---EDRMLQCATNSEYSKPVRKRAIHMIKLWHNDY 125

Query: 283 GRINKIYSVSKTADSLYLSMVEATYHQK 366
             +  + S+S     L      A++ ++
Sbjct: 126 SNVRGMESMSSLVSRLPQRQSSASHSEQ 153


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 55  YVLKSSPRRGLRDKTFGALMLSDSLVFESDSNYSQYS*LP 174
           Y+L   P   L  K +G + +   L F  D   +QY  +P
Sbjct: 600 YILPGKPLANLMIKLYGFIPMRQGLEFSRDLKLAQYMKIP 639


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 AELIKFIAYQRLQIPYTYPWLKQLITKRKEL 376
           AEL + +AY+  Q+ Y  P+L   +T RK L
Sbjct: 84  AELKRLMAYRTSQLGYEEPFLGLGLTSRKNL 114


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 327 LIPIHG*SNLSPKGRNWITKIE 392
           L+P+HG    SP  RNW T I+
Sbjct: 8   LLPVHGEGPESPSRRNWKTWIK 29


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 640 YISMYFLVT--GYET*MTLWS-VASSWQYQSIHFLTSYRCSSENYAHL 506
           Y++   LVT  GY +  T ++ V  S+  Q+IH + +YR     Y HL
Sbjct: 10  YLANILLVTCIGYYSYKTPFTKVEESFAMQAIHDIQTYRWDLSKYDHL 57


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +2

Query: 524 GATPITCKEVYRLILPATCHRPQCHSSLIASDQKIHRNVFRAVVTSEKLNE 676
           G  P     + ++++P   HR + HS    +D +I  ++ R+ V  ++ +E
Sbjct: 58  GEFPSYKHTLVQVVVPGVDHRTKLHSESSKNDSEITPDINRSKVNPQEYSE 108


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 491 PSMP--DEVCIILGATPITCKEVYRLILPATCHRPQCHS 601
           P +P  DEV + L + P +C EVY    P      + H+
Sbjct: 21  PDIPLDDEVWVSLWSVPESCPEVYDFFPPGLIREMRDHA 59


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 560 LILPATCHRPQCHSSLIASDQKIH 631
           +IL  TC+   C SSLI S  K++
Sbjct: 200 IILIVTCYTVYCSSSLIGSPAKMY 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,256
Number of Sequences: 5004
Number of extensions: 56150
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)