Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f12
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.54 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   FYFVCYVMLHLYYIMLYVLKSSPRR 81
           FY  C +M+ LYY +   L++  R+
Sbjct: 352 FYIPCIIMVFLYYNIFKALRNRARK 376


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 LIKFIAYQRLQIPYTYPWLKQLITKRKELDHENRKESFQSE 412
           L+  I Y  L   +  P+ + L  +   L+H  R+E +QS+
Sbjct: 421 LLNPIIYATLNRDFRKPFREILYFRCSNLNHMMREEFYQSQ 461


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +2

Query: 335 YPWLKQLITKRKELDHENRKESFQSEKHF 421
           YPW++    +++      R ++ + EK F
Sbjct: 261 YPWMRSQFERKRGRQTYTRYQTLELEKEF 289


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 155  VSIVSYHG*PTLQTETHSASRKKQMPRAG 241
            VS   YHG  +  ++    S +K +PR G
Sbjct: 1814 VSDFIYHGTSSTSSDISPMSEQKSLPRRG 1842


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 155  VSIVSYHG*PTLQTETHSASRKKQMPRAG 241
            VS   YHG  +  ++    S +K +PR G
Sbjct: 1810 VSDFIYHGTSSTSSDISPMSEQKSLPRRG 1838


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 278 SFGQILGSCIERHRRVASVSSVKQNAF 198
           S GQ+   CI  +R +   SSV + A+
Sbjct: 166 SLGQVFMLCIFGNRLIEESSSVMEAAY 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,129
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)