Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f11
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 93 5e-20
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 40 4e-04
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.5
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 26 4.6
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 6.1
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 6.1
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.1
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 8.1
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 92.7 bits (220), Expect = 5e-20
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Frame = +2
Query: 224 IDFSKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIRNYQG-PDPLEPW 400
I+ SKENI+P + G + L+ + LQ ++ HE I + DPL+ W
Sbjct: 16 IEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75
Query: 401 FNYIQWVEQSFPK-HGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWIKYVDCLSNPLE 577
+YI+W +FP+ + L++ C + F + Y D R++++W++YV+ + P+E
Sbjct: 76 IDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVE 135
Query: 578 IYQRLYSTGIGVECAEFYRAWACYCEESSDYKKANQVYMLGLQAK 712
++ L IG E + FY +A Y E ++KA++VY G + K
Sbjct: 136 LFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 39.9 bits (89), Expect = 4e-04
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Frame = +2
Query: 383 DPLEPWFNYIQWV-EQSFPKHGHEGHIDKLIKDCLQLFENDKKYYQDRRFVKLWI-KYVD 556
DP++ W+ I+W+ E F G E ++K++ D +Q E + D R + + + K
Sbjct: 48 DPVDVWYRCIEWLLETRFL--GMET-VNKMLDDAIQYLERCRFALNDVRHLLIQLAKIKQ 104
Query: 557 CLSNPLEIYQ------RLYSTGIGVECAEFYRAWACYCEESSDYKKANQVY 691
P E+ Q +L S GIG+E A FY + +K+A++V+
Sbjct: 105 SYETPDELQQAAKQFYQLASKGIGLELALFYEEYGSLLIRMQRWKEASEVF 155
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 474 KIAFNYLKMIRNIIKIEDLLSCGLNMW 554
+ AF+Y ++RNI ++ LLS L W
Sbjct: 4684 EFAFDYYLVVRNIEELPQLLSSALRQW 4710
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 467 LIKDCLQLFENDKK---YYQDRRFVKLWIK 547
LI CLQ F +K Y+ RRF +W+K
Sbjct: 23 LISGCLQYFYEVRKRSHYFHFRRFWTIWLK 52
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +2
Query: 452 GHIDKLIKDCLQLFEND----KKYYQDRR--FVKLWIKYVDCLSNPLEIYQRL 592
G + ++ K+ +Q + + KK + +R+ F LW D L NP +++++L
Sbjct: 153 GTVKQISKEAMQKTDKNYDFAKKGFSNRKKMFYDLWHLITDSLENPKQLWEKL 205
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 404 NYIQWVEQSFPKHGHEGHIDKLIKDCLQLFE 496
+Y+QW + + P+ G H+ ++ K+ +FE
Sbjct: 199 DYLQWKDDTLPEIGKLFHLQEVHKEYNPMFE 229
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 593 YSTGIGVECAEFYRAWACYCEESSDYKKANQVY 691
+ + + V+C EFY ++ E+S +KK+N Y
Sbjct: 910 FGSDLAVKCFEFYLSYVYQLEDS--FKKSNSRY 940
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 129 FCHYFKC*APDLHFYFTQAQFLSIIIVNRIE 37
+CH+FK +H +F + + L ++N E
Sbjct: 105 YCHHFKLSKVKVHLFFCRLKLLDYGLLNESE 135
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 305 SDADAQKQLQIQKEEHETAIRNYQGPDPLEPWFNYIQWV 421
S D +L I+ + A+R ++ D +E +NY+ ++
Sbjct: 322 SSEDEPARLSIRFPDGSRAVRRFKKDDTVESVYNYVDYM 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,612
Number of Sequences: 5004
Number of extensions: 56789
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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