Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f10
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-14|CAB54336.2|  224|Caenorhabditis elegans Hypothetical...   109   2e-24
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    30   1.6  
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    29   2.7  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    29   2.7  
Z68120-3|CAA92201.1|  266|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AL110477-14|CAB54336.2|  224|Caenorhabditis elegans Hypothetical
           protein Y113G7B.24 protein.
          Length = 224

 Score =  109 bits (263), Expect = 2e-24
 Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
 Frame = +3

Query: 303 STEELQFSDDE--EEVTAETVLKTLQSAWQNERLSPEILPHQNDMVECMLGQIQHMERNI 476
           +T  L F DDE  E  T E VL+ + + WQNE  +P +LP Q ++VE +L QIQ ME NI
Sbjct: 7   ATTFLDFDDDEYDEMTTPEEVLRKMTATWQNELCAPCLLPTQMELVEILLDQIQGMEENI 66

Query: 477 NK-LSKTDLRTSIHKMEISRIKFIICNYLKTRLNKIEKYCIPILNQERQRIET-DTNYLT 650
            K   K  LR S+H++E+ RI FI  +Y++ RL KIE      ++Q ++R E   ++ L+
Sbjct: 67  GKQTDKMQLRISVHRVELQRIGFITSDYVRCRLQKIESNPHDAIDQHKKRKEEGKSDLLS 126

Query: 651 PSEYKYAQEYVLNMENHMKNVVLNKMPGNMQ 743
            SE K+A+EY L   N  +  VL  MP  ++
Sbjct: 127 ESEMKFAEEYALAESNLFQKTVLEFMPAALK 157


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
 Frame = +3

Query: 309  EELQFSDDEEEVTAETVLKTLQSAWQNERLSPEILPHQNDMVECMLGQIQHMERNINKLS 488
            +E++  DDE   T E +LK      +NE+   +++      VE  + Q Q  + + N   
Sbjct: 851  DEIRAKDDELRATKERLLKMEHDFRENEKKLDQVI------VERAVIQEQLQQESENSAE 904

Query: 489  KTDLRTSIHKMEISRIKFIICNYLKTRLNKIEKYCIPILNQERQRIET--DTNYLTPSEY 662
              D+R  +       +++I+ N ++ RL++ E+      ++ R+++ET  D       E 
Sbjct: 905  LDDIRGRLQTRN-QELEYIV-NDMRDRLSEEEQQNEKNNDERRKQMETVRDLEEQLEQEE 962

Query: 663  KYAQEYVLNMEN 698
            +  Q+ +L+  N
Sbjct: 963  QARQKLLLDKTN 974


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 291 KNMESTEELQFSDDEEEVTAETVLKTLQSAWQNERLSPEILPHQND 428
           KN+E + E+Q  D+E +V  E V+KT     Q  R     L   ND
Sbjct: 155 KNLEKSFEVQQDDEEPDVLFEKVVKTPNKQLQEARRFQNELIFLND 200


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 291 KNMESTEELQFSDDEEEVTAETVLKTLQSAWQNERLSPEILPHQND 428
           KN+E + E+Q  D+E +V  E V+KT     Q  R     L   ND
Sbjct: 155 KNLEKSFEVQQDDEEPDVLFEKVVKTPNKQLQEARRFQNELIFLND 200


>Z68120-3|CAA92201.1|  266|Caenorhabditis elegans Hypothetical
           protein T24C2.3 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 483 LSKTDLRTSIHKMEISRIKFIICNYLKTRLNKIEKYC---IPILNQERQR--IETDTNYL 647
           L + D+   IH++EI   + +I +Y   ++   EK C   + I+ ++  +  IE  +N  
Sbjct: 2   LKEADINNIIHQLEIISYREMIKHYENFKMEDTEKCCKYMLLIIAEQTHKCIIEKISNAK 61

Query: 648 TPSEYKY 668
            P  YK+
Sbjct: 62  LPDIYKH 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,076
Number of Sequences: 27780
Number of extensions: 251896
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)