Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f09
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical pr...    49   3e-06
U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.        49   3e-06
Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical
           protein D2045.6 protein.
          Length = 780

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +1

Query: 517 DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 639
           D + +W  LQ+G++  Y+++ M  + Y+ LYT VY+YCTS+
Sbjct: 12  DSEVVWKKLQDGLDVAYRRENMAPKDYMTLYTSVYDYCTSI 52


>U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.
          Length = 780

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +1

Query: 517 DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 639
           D + +W  LQ+G++  Y+++ M  + Y+ LYT VY+YCTS+
Sbjct: 12  DSEVVWKKLQDGLDVAYRRENMAPKDYMTLYTSVYDYCTSI 52


>Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical
           protein K08E7.7 protein.
          Length = 729

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 28/38 (73%)
 Frame = +1

Query: 523 DQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTS 636
           + +WG LQ+G+  +Y++++M K+ Y+ LY  VYN CT+
Sbjct: 4   EAVWGTLQDGLNLLYRREHMSKKYYMMLYDAVYNICTT 41


>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 490 RPQV--PLRQK--DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 639
           RPQV   L+ K  +FD++W  L+  I  +   + +   ++   ++ VY+ C S+
Sbjct: 14  RPQVMYSLKPKVVEFDKVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSI 67


>Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical
           protein ZK520.4a protein.
          Length = 850

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 490 RPQV--PLRQK--DFDQIWGDLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSV 639
           RPQV   L+ K  +FD++W  L+  I  +   + +   ++   ++ VY+ C S+
Sbjct: 73  RPQVMYSLKPKVVEFDKVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSI 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,691
Number of Sequences: 27780
Number of extensions: 292733
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)