Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f05
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 71 1e-13
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 30 0.30
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 29 0.92
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 28 1.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.1
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 27 2.8
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 27 3.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 4.9
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 4.9
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 8.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.6
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 71.3 bits (167), Expect = 1e-13
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Frame = +3
Query: 249 CAYTLMLMAIFWVTECIPLPVTSFL-PIL-IF----------PMSGVMDTAKTCRCYMND 392
C L+++++ W TE IPL VTSFL P + +F P+SG T N
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKILRDENGSPLSGKESTKVIFSSMWNP 493
Query: 393 TIIMFLGSMMLAAAVEQSGLHKRLALWTIRAIGLSHYKLLFAISFITMFVSMWITNTAAT 572
TI++ LG +AAA+ + + KRLA + G +L F+ MF SMWI+N AA
Sbjct: 494 TIVLLLGGFTIAAALSKYHIAKRLATSILAHAGRKPRSVLLTNMFVAMFASMWISNVAAP 553
Query: 573 TMMVPINSALLK 608
+ I LL+
Sbjct: 554 VLCFSIIQPLLR 565
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 458 FMKSRLLDSSSQHHAPKKHYNSVIHIAAARFSS 360
F S+ L SSS H P+ H NS HI+ A F S
Sbjct: 242 FSGSKFLSSSSYPHTPEAHLNS-NHISPASFGS 273
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 0.92
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 584 DHHRCSSCVGYPHRDEHS 531
D+ CSSCV + H D HS
Sbjct: 232 DYDLCSSCVSHVHHDHHS 249
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 297 IPLPVTSFLPILIFPMSGVMDTAKTCRCYMNDTI--IMFLGSMMLAAAVEQSGLHK 458
+PL + +PI I M G +T K Y D + + S + AAV QSG+H+
Sbjct: 530 LPLAASLQVPICIMHMRGTPETMKALSIYEKDIVEEVAVELSSRVEAAV-QSGVHR 584
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 27 KRSDFAMDNTAKDSDVSIQNTDEDSEALYHDPPVTISEKAIL 152
K F+ +AK + N D + + L +D P+TIS+ + L
Sbjct: 83 KNPSFSTTKSAKSFSSTSSNIDSNLDLLNYDTPLTISKISFL 124
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 248 VCIHPDVDGYILGN--GMYPTTGDIIFADSYLSYVWRHGYC*NVPLLYE*HYYNV 406
VC+ P D ++G P + D + +Y+ + +GY +V Y HYY +
Sbjct: 317 VCVDPFGDASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKI 371
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 674 RFFIMLFLRYHIFCDYRWYW 733
RFF F ++ + Y+WYW
Sbjct: 148 RFFSGFFYKHPLLLKYQWYW 167
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 549 WITNTAATTMMVPINSALLKVFEDQNSLKMY 641
W+ ++ TM+VP +SA L V+ + +Y
Sbjct: 177 WVGEYSSVTMLVPDSSAFLNVYTNTELAYLY 207
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 45 MDNTAKDSDVSIQNTDEDSEALYHDPPVTISEKAIL 152
+ NT +D D I + E+++ P V+ SEK L
Sbjct: 104 LSNTPRDKDAVIHDKIEENKRPISQPQVSASEKVTL 139
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +2
Query: 674 RFFIMLFLRYHIFCDYRWYW 733
RFF F ++ + Y WYW
Sbjct: 204 RFFSRNFYKHPLMQQYEWYW 223
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.6
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 477 IRAIGLSHYKLLFAISFITMFVSMWITNTAATTMMVPINSALLKVFEDQNSLKMYEPNKN 656
+ A G SH K+ I F + + I T T PI+S L K+ D +++ N
Sbjct: 7 VPARGTSHQKVAIDIDFASQTI---IGRTDITVN--PIDSNLQKIVLDCYQAEIHSVYVN 61
Query: 657 GDMVATDFS 683
GD+ +S
Sbjct: 62 GDLTKFSYS 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,194
Number of Sequences: 5004
Number of extensions: 64086
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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