Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f05
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 101 5e-22
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 95 4e-20
07_03_0528 + 19086835-19087363,19087514-19087539,19087753-190880... 29 3.9
12_01_0496 + 3939731-3939758,3940459-3942773 29 5.1
03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149... 29 5.1
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 9.0
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491... 28 9.0
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 28 9.0
07_03_0113 - 13557496-13557960 28 9.0
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 28 9.0
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 28 9.0
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 28 9.0
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 101 bits (243), Expect = 5e-22
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Frame = +3
Query: 276 IFWVTECIPLPVTSFLPILIFPMSGVMDTAKTCRCYMNDTIIMFLGSMMLAAAVEQSGLH 455
++W+T+ +PL V S P+ +FP+ G+ + + YM+D I + LGS +LA A+E +H
Sbjct: 82 LWWITDAVPLAVASMAPLFLFPVFGISSSDAVAKAYMDDVISLVLGSFILALAIEHYNIH 141
Query: 456 KRLALWTIRAIGLSHYK---LLFAISFITMFVSMWITNTAATTMMVPINSALLKVFEDQN 626
+RLAL K LL I TMF+SMWI NT T MM+P+ + +L+ F +
Sbjct: 142 RRLALNITSLFCGDPVKPPLLLLGICGTTMFISMWIHNTPCTVMMMPVATGILQRFPRVD 201
Query: 627 SLKMYEPNKNGDMVATDFSSCYFCAITFSATIGGIGTL 740
+ FS + +++ IGG+ TL
Sbjct: 202 GASSSASSAADAREVQRFSKAVVLGVVYASAIGGMATL 239
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 95.5 bits (227), Expect = 4e-20
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Frame = +3
Query: 276 IFWVTECIPLPVTSFLPILIFPMSGVMDTAKTCRCYMNDTIIMFLGSMMLAAAVEQSGLH 455
++WVT +PL V S P+ +FP G+ + R YM D I + LGS +LA AV+ +H
Sbjct: 64 LWWVTGAVPLAVASMAPLFLFPALGISSSDDVARAYMGDVISLVLGSFILALAVDHHRIH 123
Query: 456 KRLALWTIRAI---GLSHYKLLFAISFITMFVSMWITNTAATTMMVPINSALLKVFEDQN 626
+RLAL + + LL ++ T VSMWI NTA T MM+P+ + +L+ F
Sbjct: 124 RRLALNVLSLFCGDPVRPSLLLLGVTGTTALVSMWIHNTACTVMMMPVATGILQRF---- 179
Query: 627 SLKMYEPNKNGDMVATDFSSCYFCAITFSATIGGIGTL 740
+ + G FS + +++ IGG+ TL
Sbjct: 180 --PRGDIDDGGGQEVRRFSKAVVLGVVYASAIGGMATL 215
>07_03_0528 +
19086835-19087363,19087514-19087539,19087753-19088064,
19088152-19089038,19089370-19089658,19089744-19089782,
19089888-19089926
Length = 706
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 63 DSDVSIQNTDEDSEALYHDPPVTISEKA 146
D+D T+ DS+A+Y PP+ S KA
Sbjct: 418 DTDFGEDRTEADSKAIYEPPPMKKSRKA 445
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 513 FAISFITMFVSMWITNTAATTMMVPINSALLKVFEDQNSLKMYEPNKNGDMVATDFSSCY 692
+ +S +S+W TN+A T+ N V E + + + NK+G MV TD+
Sbjct: 44 YNLSSTVFTLSIWFTNSADKTIAWSANQDR-PVHESGSKVML---NKDGSMVLTDYDGTV 99
Query: 693 FCAITFSA 716
I+ SA
Sbjct: 100 VWQISSSA 107
>03_06_0080 -
31512792-31513046,31514087-31514202,31514797-31514911,
31514997-31515056,31515619-31515688,31515952-31515986,
31516094-31516231,31516369-31516737
Length = 385
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 252 AYTLMLMAIFWVTECIPLPVTSFLPILIFPMSGVMDTAKTCRCYMNDTIIM 404
AYT + A+F + T+ + FP + M T CR YM T+ M
Sbjct: 3 AYTSKIFALFALIALSASATTAITTMQYFPPTLAMGTMDPCRQYMMQTLGM 53
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 63 DSDVSIQNTDEDSEALYHDPPVTISEKA 146
D+D+ T+ DS+A++ PP+ S KA
Sbjct: 616 DTDLGEDRTEADSKAIHEPPPMKKSRKA 643
>07_03_1185 +
24645963-24646316,24647990-24648226,24649027-24649170,
24649296-24649427,24649524-24649811
Length = 384
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 361 VSMTPDIGKIRIGKNDVTGSGIHSVTQNIAINIRVYA 251
+++ D G R+ D+TGSGIHS N ++ YA
Sbjct: 147 IALLEDSG-FRVNAIDLTGSGIHSYDTNKISSLTQYA 182
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 48 DNTAKDSDVSIQNTDEDSEALYHDPPVTISEKA 146
D D+D T+ DS+A++ PP+ S KA
Sbjct: 417 DELQYDTDFGEDRTEADSKAIHEPPPMKKSRKA 449
>07_03_0113 - 13557496-13557960
Length = 154
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 63 DSDVSIQNTDEDSEALYHDPPVTISEKAI 149
D+D T+ DS+A++ PP+ S KA+
Sbjct: 118 DTDFEEDRTEADSKAIHEPPPMKKSRKAL 146
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/99 (20%), Positives = 46/99 (46%)
Frame = +3
Query: 321 LPILIFPMSGVMDTAKTCRCYMNDTIIMFLGSMMLAAAVEQSGLHKRLALWTIRAIGLSH 500
+ +L+ + G++ + R Y++ I L M+ A A S HK +L + + H
Sbjct: 1483 MALLLLVVQGIIKLYEEHRKYLSSDHINILLEMISAIATHASEFHKACSLMEVSEPAIVH 1542
Query: 501 YKLLFAISFITMFVSMWITNTAATTMMVPINSALLKVFE 617
++ +++ + +++ + + M I S +L+V E
Sbjct: 1543 FENESYQTYLKLLQALFRDYPSMSEEM-DIESQILRVCE 1580
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 547 IETNIVMNEIANNNL*CDKPIALMVQSANRL*SPDCSTAAASIMLP 410
IE + +IA N + + + ANRL P+ T + +MLP
Sbjct: 272 IEAQLRKQDIARNKILQRQDAPAAIMQANRLNDPEAVTKRSKLMLP 317
>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 48 DNTAKDSDVSIQNTDEDSEALYHDPPVTISEKA 146
D D+D T+ DS+A++ PP+ S KA
Sbjct: 1075 DELQYDTDFGEDRTEADSKAIHEPPPMKKSRKA 1107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,888,237
Number of Sequences: 37544
Number of extensions: 398904
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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