Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e24
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    29   0.38 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   0.87 
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    28   0.87 
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    28   1.2  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.7  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   6.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   6.2  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   6.2  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   8.1  

>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +2

Query: 209 QDRRYEDAVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTD 388
           +D+  +  ++   +  +PE+V   S++ S D +   +  H L ++ K+K+S+A   E   
Sbjct: 202 EDKSKQIILQKAHEFQIPEKVYQFSLEHSVDEDCVTKSLHTLYLFQKNKVSVANTNELLK 261

Query: 389 QLV 397
            LV
Sbjct: 262 SLV 264


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 216 LSCKSSNLIPQGTRPQIDGALILSSNIFIFSTSASAVFAIFHILF 82
           L C  SN+  +     + G ++L   IF F TS  A F+ F +LF
Sbjct: 41  LICVDSNIKIRNGYRNLGGGIVLI--IFFFITSGLAYFSYFRVLF 83


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 78  KRIVYEKWRRQPKLMLKK*RYWRKGSKRH 164
           K IVYE ++ QPKL L++   W +  + H
Sbjct: 48  KGIVYEVYKNQPKLWLQQELIWLRRKRIH 76


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 191 IRFEDLQDRRYEDAVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAA 370
           I F +L D+  ED  K   +  L E     S  +S +    +E  ++ + W+K + SIA 
Sbjct: 152 IMFPELIDKNREDIAKAAAEAALIEPQQIHSTPVSSNECKKNEPFNSKQSWVKSRWSIAV 211

Query: 371 V 373
           +
Sbjct: 212 L 212


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 248 KHYLPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQ 421
           KH LP+      V  + + EGT E   N   W +    ++ V EG   L+G L   IQ
Sbjct: 137 KHILPDLPQSSEVDRNSETEGTREENSNTSDWDEQNEYVSEV-EGDYNLLGSLSNDIQ 193


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 417 IRMMSNPTSWSVPSLTAAIDILSFI 343
           + ++ NP+  ++  L  AIDIL+F+
Sbjct: 645 VHLLINPSEQTIEQLNTAIDILNFV 669


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 545 RRALRKYTPASLLRCKISLLMCRARCELS 459
           RR ++ Y+P S L+CK+  +   +   LS
Sbjct: 332 RRLVQYYSPVSFLQCKVDKISFYSNSSLS 360


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = -2

Query: 408 MSNPTSWSVPSLTAAIDILSFIQILKLCVNSSVPSLSSDNLTDLYVTSSGR*CFFRSFT- 232
           +S+  S S+P+ +++    + +    +  +SS   LSS + T +  +SS       SFT 
Sbjct: 14  LSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTS 73

Query: 231 --ASSYLLSCKSSNLIPQGTRPQIDGALILSSNIFIFSTSASA 109
             +SS++ S  SS+      +     A + SS+    ++S+SA
Sbjct: 74  PASSSFITSLVSSS----SQQSSSSSASLTSSSSATLTSSSSA 112


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 308 GTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQEKCAFSRTFSRIKITHNE--LY 481
           G DE  HNLR  MK++   A V    D++  L  +R  +       F+   +T +E  LY
Sbjct: 173 GVDEKLHNLREAMKEQKIEAFVVSMLDEVAWLYNLRGADVPYNPVFFAYSLVTLDEAFLY 232

Query: 482 TSVMKFYNEVEK 517
               K   EV K
Sbjct: 233 VDERKVTPEVSK 244


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 431 AFSRTFSRIKITHNELYTSVMKFYNEVEKPV 523
           A  R   +I+    +LY S  K+++EVEK V
Sbjct: 121 AILRMIVKIRNKDPDLYDSQQKYFDEVEKDV 151


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 95  KMAKTAEADVEKMKILEERIKA 160
           +M K AE   E+ KIL+ERI+A
Sbjct: 545 RMVKEAEEFAEEDKILKERIEA 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,664
Number of Sequences: 5004
Number of extensions: 51376
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)