Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e24
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.55 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.72 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.72 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.72 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.96 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = -1

Query: 586 ILQSDYINLEVSPDAERFVNTHRLLY--FVVKFHY*CVELVVSYLYAAECTRKCT----F 425
           +L+ D++     PD+  F N   + +    +  HY  +    + LY  + T K +    F
Sbjct: 109 LLEVDWLKNMWRPDSF-FKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNF 167

Query: 424 LLYPHDE*SDELVRSLLDGGYRHLILHPDPQI 329
           L+YPHD    +L    L      +I   DP +
Sbjct: 168 LIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 130 FFNISFGCLRHFSYTIRLEFELTFN*IHNE 41
           +  +++G   H S T+ LE+EL  N   NE
Sbjct: 61  WIRLTYGQTNHISLTLDLEYELVENLQANE 90


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 130 FFNISFGCLRHFSYTIRLEFELTFN*IHNE 41
           +  +++G   H S T+ LE+EL  N   NE
Sbjct: 99  WIRLTYGQTNHISLTLDLEYELVENLQANE 128


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 230 AVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTH 328
           A  LL+K++LP   +Y+S  L+ ++E  D  +H
Sbjct: 430 AENLLEKNWLPVHTSYKS-GLNLEQEKKDSISH 461


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 405 SNPTSWSVPSLTAAIDI--LSFIQILKLCVNSSVP 307
           SNPT WS  ++T A++   L  + I +  ++ ++P
Sbjct: 567 SNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLP 601


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 92  IYYSFGIRTHI*LNS 48
           ++Y FG+ TH+ L+S
Sbjct: 62  LFYEFGLITHVKLSS 76


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 197 FEDLQDRRYED 229
           F+DLQD+ YE+
Sbjct: 398 FKDLQDKYYEE 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,116
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)