Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e20
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 1.6
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.6
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 26 2.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 2.8
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 3.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 3.7
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 4.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.9
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 25 4.9
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 6.5
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 6.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 8.6
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 245 DINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*P 406
D+NK +V+NK+ A K + E+ +L K K L +L S +AA E + P
Sbjct: 702 DLNKCSKVMNKLRASTK--LAEV-LVLRKDTSKKLISLSLKKSLVEAAKENRMP 752
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 257 LKEVINKMAAEQKKNVEELTTMLEKQ 334
LKE+ K+ +Q+KN E++ T+ +K+
Sbjct: 242 LKEIHAKVTQQQRKNTEDVLTLRDKK 267
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 349 QNLRRLLLEHGGQLFNVFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGSFHFIYY 170
+++ RLL H F V++ G FV +F F+Y + + + L+ + + YY
Sbjct: 78 RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLYSLLFKNLDYIQPGPTFLIFAILYQYY 137
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 2.8
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 203 ARKLFEGVPDINNID--INKLKEVINKMA--AEQKKNVEELTTMLEKQPPKVLDALQAGA 370
+R E + D + +N+L+++ K A ++ K+ E L +L K+P +A+Q
Sbjct: 79 SRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAKRETELLDEILPKEPAGSKEAMQQKK 138
Query: 371 SAFKAALE 394
+AAL+
Sbjct: 139 KEKRAALK 146
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +2
Query: 122 GKNSVDNIIKWMKDSXIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKN 301
G NSVD++++ K ++ E + RKL+ + L NK+ +E +
Sbjct: 296 GLNSVDSLVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLD--ANKIYSESVVD 353
Query: 302 VEELTTMLEKQPPKVLDALQ 361
+++ T++E+ L LQ
Sbjct: 354 LDKCRTLVEETIADHLQFLQ 373
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 280 HFVDNLFQFIYVYIVDIRNAFEQ 212
HF+ ++F FIY +V + N F +
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHR 626
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 4.9
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 158 KDSXIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQP 337
KD E K S+E + K E P ++ K KE NK + KK+ ++ K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAP--KGLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271
Query: 338 PK 343
PK
Sbjct: 272 PK 273
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 258 NLFMSILLISGTPSNNFRAFSSEAFTSSIIXES 160
NLF S+L T + N R F A TSS I S
Sbjct: 3774 NLFDSLLSSIETATKNMRTFKELAETSSFIEMS 3806
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 263 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 400
+VI+K+ AA K+N E + +E + LDA +AG F L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 25.0 bits (52), Expect = 6.5
Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Frame = +2
Query: 89 MDQFFEKLQKDGKNSVDNIIKW----MKDSXIIDEVKASEEKARKLFEGVPDINNIDINK 256
+++F EK+ D + + +W + S ++ A + + F+G PD+ + D++
Sbjct: 145 VNEFNEKVGLDRVREILDCCEWNLSQVDKSFSEEKDDAGDFYLPERFKGSPDMQSTDLDN 204
Query: 257 LKEVINKMA-AEQKKNVE--ELTTMLEK 331
L + +N++ A+ +KN + + +LEK
Sbjct: 205 LMKEMNQIRDADLEKNEKKAKALNLLEK 232
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 263 LSIYLCLYC*YPERLRTTFAP 201
L +Y YC Y +RT FAP
Sbjct: 399 LFVYYMRYCTYKSLMRTQFAP 419
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 484 HLIFFECYVKFI 449
HL+FFE Y KF+
Sbjct: 804 HLLFFEAYTKFL 815
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,267
Number of Sequences: 5004
Number of extensions: 27072
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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