Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e20
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0213 - 2692253-2694562 32 0.23
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 30 0.93
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 29 2.1
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 29 2.8
06_01_0975 - 7566280-7566461,7567004-7567132,7567203-7567236,756... 29 2.8
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 28 3.7
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 28 5.0
08_02_0059 - 11778739-11780998,11781744-11781751 28 5.0
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 27 8.7
>04_01_0213 - 2692253-2694562
Length = 769
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 200 KARKLFEG-VPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQP 337
K R L+EG + +N I N+L+ +N + E KKN+ +L EKQP
Sbjct: 560 KLRSLYEGALKALNEIKGNQLQSSVNN-SVEGKKNLAQLLIDKEKQP 605
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 30.3 bits (65), Expect = 0.93
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +2
Query: 110 LQKDGKNSVDNI--IKWMKDSXIID----EVKASEEKARKLFEGVPDINNIDINKLKEVI 271
L++ G N++ I + KD +I +V+AS + G P + + L +I
Sbjct: 44 LKRVGVNTIPGIEEVNIFKDDVVIQFLNPKVQASIGANTWVVSGTPQTKKLQ-DLLPSII 102
Query: 272 NKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASA 376
N++ + N+ L +KQ P +AGASA
Sbjct: 103 NQLGPDNLDNLRRLAEQFQKQAPGA-SGEEAGASA 136
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Frame = +2
Query: 110 LQKDGKNSVDNI--IKWMKDSXIID----EVKASEEKARKLFEGVPDINNIDINKLKEVI 271
L++ G N++ I + KD +I +V+AS + G P + + L +I
Sbjct: 483 LKRVGVNNIPGIEEVNIFKDDVVIQFQNPKVQASIGANTWVVSGTPQTKKLQ-DLLPTII 541
Query: 272 NKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKA 385
N++ + N+ L +KQ P +AGASA A
Sbjct: 542 NQLGPDNLDNLRRLAEQFQKQVP----GAEAGASAGNA 575
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 188 ASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQPP 340
A+E + KL+E VP++ + +N + + + A + V+ L +L +PP
Sbjct: 30 AAESSSAKLYEDVPEMPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPP 80
>06_01_0975 -
7566280-7566461,7567004-7567132,7567203-7567236,
7567347-7567579,7568526-7568587,7568704-7568761,
7568856-7568922,7569016-7569063
Length = 270
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 200 KARKLF-EGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDA 355
K RKL EG+ DIN+L++ + AE + E L L ++ ++++A
Sbjct: 16 KKRKLLDEGLDQKRAADINELRQAMKDWVAELQSENERLVAKLTQKEQQLVEA 68
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 312 NSSTFFFCSAAILLITSFNLFMSILLISGTPSNNFRAFSSEAFTSSIIXES 160
++STFF A+ L + + ++I+ ISGT N +F+ + SS+ S
Sbjct: 288 DASTFFLLENALALFIALLVNVAIVSISGTICANNLSFADTSTCSSLTLNS 338
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 27.9 bits (59), Expect = 5.0
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +2
Query: 104 EKLQKDGKNSV-DNIIKWMKDSXIIDEVKAS-EEKARKLFEGVP-DINNIDINKLKEVIN 274
E+L + + S+ N+ + I +E+K EE ++LF+ V + L+E +
Sbjct: 161 EELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARH 220
Query: 275 KMAAEQKKNVEELTTMLEKQPPKVLDA 355
K A ++++ EEL MLE+ KV +A
Sbjct: 221 K-AEQERREREELDRMLEENRRKVEEA 246
>08_02_0059 - 11778739-11780998,11781744-11781751
Length = 755
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +2
Query: 185 KASEEKARKLFEGVPDINNIDINKLK-------EVINKMAAEQKKNVEELTTMLEKQPPK 343
K EEKARKL + + ++NN+ LK + + + K +E T+L P
Sbjct: 560 KLKEEKARKLSDNLNNLNNLTTLILKGVDLPISSIFTAPSLQFLKTIELTGTILLTTPSP 619
Query: 344 VLDALQAGASAFK 382
+D + S F+
Sbjct: 620 EIDKMTTSPSDFQ 632
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 158 KDSXIIDEVKASEEKA-----RKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEE 310
++S +D++K E KA K+ E + D D K++ AAE++K VEE
Sbjct: 49 EESNFLDDLKDGERKALAELRAKVEEAIVDGKLFDDGKVEAKKKAAAAEEEKAVEE 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,193
Number of Sequences: 37544
Number of extensions: 155911
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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