Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e16
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    28   0.22 
AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    28   0.22 
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    28   0.22 
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    25   2.7  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    24   4.8  

>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 240 QNDFI--RNTTENLTQFVHVCH*IIEFSYDQRLGICQFVDLILEDL-VAFD 97
           Q+ F+  R+TT NL QFV  CH     S D RL     VD+I  DL  AFD
Sbjct: 35  QHGFVPNRSTTTNLMQFVSSCH----KSIDARLQ----VDVIYTDLKAAFD 77


>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 240 QNDFI--RNTTENLTQFVHVCH*IIEFSYDQRLGICQFVDLILEDL-VAFD 97
           Q+ F+  R+TT NL QFV  CH     S D RL     VD+I  DL  AFD
Sbjct: 35  QHGFVPNRSTTTNLMQFVSSCH----KSIDARLQ----VDVIYTDLKAAFD 77


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 240 QNDFI--RNTTENLTQFVHVCH*IIEFSYDQRLGICQFVDLILEDL-VAFD 97
           Q+ F+  R+TT NL QFV  CH     S D RL     VD+I  DL  AFD
Sbjct: 35  QHGFVPNRSTTTNLMQFVSSCH----KSIDARLQ----VDVIYTDLKAAFD 77


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 647 MNINFLRLDIS-SPICNLRYPNARSSSENCVRNSVKSLPLAEHTIRAPSNLN 495
           +N+N +R  ++ + +  L     +++ E     +V  + + EHTIR P N++
Sbjct: 88  INVNRMRRAVTDADLAKLERKLRQAADEGSTNGTV--ITIGEHTIRLPHNIS 137


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 567 ELRAELREVATPGRAHYPGAFKLEHRPLGR 478
           ELR  L+    PG A   G+F++ HR  GR
Sbjct: 209 ELRPRLKG-GGPGSALLNGSFRVYHRCFGR 237


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,893
Number of Sequences: 2352
Number of extensions: 13836
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)