Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e15
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   2.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   5.4  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   5.4  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.5  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 195 WGVKKKAHSGPTFLGTALFAPLYAHSN 115
           WG   K HS    L T L A  +AHS+
Sbjct: 108 WGTLNKDHSNAILLHTGLSASSHAHSH 134


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 573  QYKAASTKIFLEAVSGNKNARRGPFNKYK 487
            Q  A   + +LEAV+G ++ RRG  N+ K
Sbjct: 1094 QQHAEVNRTYLEAVAGKESFRRGLNNRVK 1122


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 204 IFLWGVKKKAHSGPTFLGTALFAPLYAHSN 115
           I  W VKK A + P  + T   APL   +N
Sbjct: 335 ILEWSVKKLAWTSPALVLTGFLAPLKKDAN 364


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 428 VLMLLHDMDSTNISQCVKQI*TLFPFPII 342
           +L L+  +DS N+ +  K I TL+ FP +
Sbjct: 162 LLELVLTLDSANLKRIEKSINTLYSFPFM 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,140
Number of Sequences: 5004
Number of extensions: 60397
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)