Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e13
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 4.3
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 4.3
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 5.6
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 7.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.5
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 9.9
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 9.9
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 579 RNNQKGIEFTEGQNVFIRDSKNKNLRGENN 668
RNN K + T+ +NV I+ K + ++ ENN
Sbjct: 897 RNNNKEVNLTKAENVGIK--KRRIMKNENN 924
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 399 EYRNTPIDSEINMSPNELLLGRQTVTLLP 485
+Y N ID + N ELL QT+TL+P
Sbjct: 1301 KYWNLKIDLDNNSDYRELLRESQTLTLMP 1329
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 408 CDIPSRPYKYLSDQNHIF 355
CDIP P++ LSD+N +
Sbjct: 198 CDIPYDPFRKLSDENKAY 215
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 453 LLGRQTVTLLPTRSSLPGKNKLKKVRNSLQ 542
+LG T+L + LP KNKL + SLQ
Sbjct: 305 ILGEIKTTILLPKLPLPEKNKLHFITQSLQ 334
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 471 VTLLPTRSSLPGKN--KLKKVRNSLQKKQIKYKYYHDRRNNQK 593
+ LP S+ P K+KK++NS+++KQ++ K + K
Sbjct: 76 INQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLK 118
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 273 EIPILSQILEIRNY*TVMHHLYIALLEYPISR 178
E+ +L Q+ E+R Y + ++ LLE P+ R
Sbjct: 1200 EVVVLDQVYEVRVYSHNLRNITYILLEAPVFR 1231
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 237 YEFQEFVKEWGFQLVKSSPYYARSNGMVERHIQIVKKMFKKCDFDQKDIYMALMEYRNTP 416
++ EF++ + P AR RH+ + K+ + D K I +E RN P
Sbjct: 437 HQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKIAIEMRNVP 495
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = +3
Query: 27 KQPWD---IIGADMFFYKNNIYLMVVDYL 104
+QP+D I D FFY++NI++ + YL
Sbjct: 38 RQPFDEGLSINEDSFFYRHNIHVPRIVYL 66
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 507 KNKLKKVRNSLQKKQIKYK-YYHDRRNNQK 593
K++LKK+++ K +K+K +H NN+K
Sbjct: 53 KHELKKLKSHFLKDTLKHKRNHHANSNNEK 82
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 63 FYKNNIYLMVVDYLTKYVEIINMVDQSTQSHILALKQMFARWGIPTKLC 209
F + + L ++YLTKY+E+++ V + LA + GI LC
Sbjct: 129 FTQRLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCY-HHGITALLC 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,438
Number of Sequences: 5004
Number of extensions: 56057
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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