Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e13
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 52 5e-07
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 52 5e-07
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 52 5e-07
AL132952-13|CAB61154.2| 283|Caenorhabditis elegans Hypothetical... 30 1.7
Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical ... 28 5.2
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 28 5.2
Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical p... 28 6.9
Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical ... 28 6.9
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 27 9.1
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Frame = +3
Query: 39 DIIGADMFFYKNNIYLMVVDYLTKYVEIINMVDQSTQSHILALKQMFA--RWGIPTKLCT 212
D++ + N L ++D TKY + + D+ ++ + A + +A IP KL T
Sbjct: 1627 DLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLT 1686
Query: 213 DDASQFNSYEFQEFVKEWGFQLVKSSPYYARSNGMVERHIQIVKKMFKK-----CDFDQK 377
D +F + F +F + + + Y +R+NG VER + + + KK ++D +
Sbjct: 1687 DQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQ 1746
Query: 378 DIYMALMEYRNTPIDSEINMSPNELLLGRQTV 473
+Y A+ Y N + +P L+ GR +
Sbjct: 1747 VVY-AVYAYNNC-VHENTGETPMFLMHGRDVM 1776
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Frame = +3
Query: 39 DIIGADMFFYKNNIYLMVVDYLTKYVEIINMVDQSTQSHILALKQMFA--RWGIPTKLCT 212
D++ + N L ++D TKY + + D+ ++ + A + +A IP KL T
Sbjct: 1530 DLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLT 1589
Query: 213 DDASQFNSYEFQEFVKEWGFQLVKSSPYYARSNGMVERHIQIVKKMFKK-----CDFDQK 377
D +F + F +F + + + Y +R+NG VER + + + KK ++D +
Sbjct: 1590 DQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQ 1649
Query: 378 DIYMALMEYRNTPIDSEINMSPNELLLGRQTV 473
+Y A+ Y N + +P L+ GR +
Sbjct: 1650 VVY-AVYAYNNC-VHENTGETPMFLMHGRDVM 1679
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Frame = +3
Query: 39 DIIGADMFFYKNNIYLMVVDYLTKYVEIINMVDQSTQSHILALKQMFA--RWGIPTKLCT 212
D++ + N L ++D TKY + + D+ ++ + A + +A IP KL T
Sbjct: 1541 DLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLT 1600
Query: 213 DDASQFNSYEFQEFVKEWGFQLVKSSPYYARSNGMVERHIQIVKKMFKK-----CDFDQK 377
D +F + F +F + + + Y +R+NG VER + + + KK ++D +
Sbjct: 1601 DQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQ 1660
Query: 378 DIYMALMEYRNTPIDSEINMSPNELLLGRQTV 473
+Y A+ Y N + +P L+ GR +
Sbjct: 1661 VVY-AVYAYNNC-VHENTGETPMFLMHGRDVM 1690
>AL132952-13|CAB61154.2| 283|Caenorhabditis elegans Hypothetical
protein Y51H4A.22 protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = +3
Query: 312 GMVERHIQIVKKMFKKCDFDQKDIYMALMEYRNTPIDSEIN 434
G + RH++ + K F+K + +++++ +++ N D ++N
Sbjct: 22 GKIHRHLKKIGKRFEKWEKTEEEVFAEKLQHWNEQTDKQVN 62
>Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical
protein F13B12.4 protein.
Length = 435
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 54 DMFFYKNNIYLMVVDYLTKYVE-IINMVDQ-----STQSHILALKQMFARWGIPTKLCTD 215
D +F N+Y ++ L K E I+ + D T I ++ + AR+G PTK+
Sbjct: 200 DFYFESTNVYHEIIVQLKKDKEQIVKIPDYFVHSAGTGGTISSVGRYVARYGAPTKVVLS 259
Query: 216 DASQFNSYEF 245
D+ Y++
Sbjct: 260 DSQYSLFYDY 269
>AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical
protein Y111B2A.3 protein.
Length = 718
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +3
Query: 63 FYKNNIYLMVVDYLTKYVEIINMVDQSTQSHILALKQMFARWGIPTKLCTDDASQFNSYE 242
FY +N+ L Y + ++ ++ +IL ++++++ + T+ + QF
Sbjct: 58 FYTSNLSLDATQYFQAGITQKDV--GLSKDYILLMRKLYS-------MLTEPSKQFFQ-- 106
Query: 243 FQEFVKEWGFQLVKSSPYY 299
+EFVKEW F + +PY+
Sbjct: 107 -EEFVKEWQFHEIDYTPYF 124
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = +3
Query: 555 KYKYYHDR-RNNQKGIE------FTEGQNVFIRDSKNKNLRGEN 665
KY YH RN ++G+E F G+ VF+R K RG N
Sbjct: 444 KYISYHSELRNEEEGVENRLNTSFEPGRKVFLRKGITKPRRGNN 487
>Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical
protein Y49E10.21 protein.
Length = 387
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 RQTVTLLPTRSSLPGKNKLKKVRNSLQKKQIKYKYYHDRRNN---QKGIEFTEGQNVFIR 632
R+ +T L T+ KN+LK ++N ++ + +YK Y + N Q G++ + VF R
Sbjct: 49 REALTALKTK-----KNELKNLKNDVESLKNEYKTYIEMVENGLKQSGLDIKQVVQVFER 103
>Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical
protein F35G12.5 protein.
Length = 340
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 303 RSNGMVERHIQIVKKMFKKCDFDQKDIYMALMEYRNTPIDSEINMSPNEL 452
+S +ER+IQ + + KKC D + + L ++ PID + S L
Sbjct: 32 KSKMAIERYIQGINLLDKKCILDNDENHNVLFKF--APIDQDFAHSSTNL 79
>AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical
protein ZC132.9 protein.
Length = 246
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -2
Query: 225 VMHHLYIALLEYPISRTSALMLICDFAWIDPPY-----L*FPHI*LNNLQPLSIY-YFYR 64
+MH+++ L+ P + AL W Y L + +N+ QP + YF R
Sbjct: 37 IMHNIFDHLIA-PTTTNMALAFAFANQWFSSTYETLIGLFSIYKFMNSRQPAELRGYFTR 95
Query: 63 RTYQLLLYPRVVSVCPLELGF 1
R+ +LLY ++SV + GF
Sbjct: 96 RSVAVLLYVILLSVIAKDFGF 116
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 550 CFFCKLFLTFFNLFLPGKEDLVGNKVTVCLPKSNSLGDMLISESIG 413
C F +L L +F G ++ + VC N G M+ S +G
Sbjct: 427 CLFLQLLLITAEMFPTGIRNIASAHINVCGRLGNVFGPMVFSYKLG 472
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466,985
Number of Sequences: 27780
Number of extensions: 307160
Number of successful extensions: 813
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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