Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e12
(217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 0.25
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 0.59
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 26 0.78
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 1.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 24 3.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 24 3.1
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 23 4.1
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 23 4.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 23 7.2
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 23 7.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 23 7.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.2
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 22 9.6
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 22 9.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 22 9.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 22 9.6
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 0.25
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 130 PLKDLTEIAPNEDPYVDCDPLVF 198
PLK++T + P +DP + + LV+
Sbjct: 314 PLKNITSLLPKQDPLISTEILVY 336
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 0.59
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 46 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNED 168
D E D +E + AL++QRK + + + D+++ A N D
Sbjct: 136 DDEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWADNSD 176
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 0.78
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 16 NKPGAAIGGGDSEPDE 63
NKP A +GGGDS +E
Sbjct: 154 NKPLAVVGGGDSAAEE 169
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 KDLTEIAPNEDPYVDCDPLVFKIIK 210
K LT I + P +CDP V+KI++
Sbjct: 6 KVLTIIKLLKAPLAECDPTVYKILE 30
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 1 KKKKGNKPGAAIGGGDSEPDEPLEPK 78
K+K+G P ++ D+PL+PK
Sbjct: 123 KRKRGRPPKIKSSSPSTKLDDPLKPK 148
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 23.8 bits (49), Expect = 3.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 1 KKKKGNKPGAAI---GGGDSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNE 165
K K G K G I G GD +PD ++ + ++ VFT + L+ E++ E
Sbjct: 249 KVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELSLKE 306
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 148 EIAPNEDPYVDCDPLVFKIIKKR 216
++ + PY PLVFK++++R
Sbjct: 117 DVCVSNTPYQISSPLVFKLLQQR 139
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = -2
Query: 186 IAVNIWILVRCYLCQIFQWINLYSENVTL 100
++V +W R + ++WI ++S+++ L
Sbjct: 816 VSVKVWDSERLAKNRAWEWIGVFSDDIAL 844
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 85 LKVQRKGDVFTIQVNPLKDLTEIAPN-EDP 171
+ + RKG V ++ +NP + I N DP
Sbjct: 314 MAINRKGQVLSVSINPETIIPYILSNLNDP 343
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 1 KKKKGNKPGAAIGGGDSEPDEPLEPKPALKVQRKGDVFTIQVNPL 135
K K +KP + P P + + V R+ +FT + +PL
Sbjct: 158 KPSKPSKPRKKVPVSHPLPPTPPSREEHVSVPRESSLFTYEDDPL 202
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 94 QRKGDVFTIQVNPLKDL-TEIAPNEDPYVDCDPL 192
Q F + N K L + I + DPYVD +PL
Sbjct: 39 QHSNGSFPLFQNHRKSLPSAIYKSVDPYVDANPL 72
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 203 ILNTKGSQSTYGSSFGAISVRSFNGLTCIVKTSPFLCTF 87
I+ KGS G + FNGL C+ +P TF
Sbjct: 663 IIPNKGSIMG-GYEVTILGANFFNGLVCLFGDNPAAVTF 700
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 132 WINLYSENVTLSLY 91
W NL S VTL+LY
Sbjct: 40 WSNLTSSTVTLTLY 53
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 13 GNKPGAAIGGGDSEPD 60
G PG A GG D+ P+
Sbjct: 624 GGAPGGAPGGADNGPE 639
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 13 GNKPGAAIGGGDSEPDEPLEPKPALKVQRKGDVFTI 120
GNKPG GG + + + K+ RK +VF +
Sbjct: 274 GNKPGLGNVGGGALDITDADIRNINKLARKKNVFEL 309
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 22 PGAAIGGGDSEPDEPL 69
P A+ G DSEPD L
Sbjct: 155 PSASSNGKDSEPDRQL 170
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 142 LTEIAPNEDPYV 177
LT+I+PNE P++
Sbjct: 617 LTQISPNERPFI 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,666
Number of Sequences: 5004
Number of extensions: 13897
Number of successful extensions: 31
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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