Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e07
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   0.78 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   1.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   1.8  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    24   3.2  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    23   4.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    23   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.3  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  NINNMNLPYFISTLVIIVKRPYAFLENIVKKSFY 138
           +I    + YF     I+V R Y F ENIVK + Y
Sbjct: 845 SIGRFTIMYFDGQKFIVVAR-YLFGENIVKAALY 877


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 78  CNYCEKTLCFS*EYCKKKFLFF-LSKYVVFLLNTIIM 185
           C++  K +CFS +    +FLF+  S   + L++T IM
Sbjct: 143 CSFVGKDVCFSNQKFFYQFLFYGFSAACMVLISTAIM 179


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 135 KTFFYNILKKSIGSF 91
           K+FFY IL+ S+ SF
Sbjct: 839 KSFFYKILRSSLASF 853


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 114 EYCKKKFLFFLSKYVVFLLNTIIMF 188
           E    KFL  LSKY+++L  +I +F
Sbjct: 156 EESSNKFLCPLSKYLIYLFLSIHLF 180


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 190

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 40 INNMNLPYFISTLVII 87
          IN  NLP+FI +L I+
Sbjct: 48 INEFNLPWFIYSLTIL 63


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 49  MNLPYFISTLVIIVKRPYAF 108
           ++LP+F+S  +  +  PYAF
Sbjct: 379 ISLPWFLSLFLCTMPLPYAF 398


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 57   TLFYFNTCNYCEKTLCFS*EYC 122
            +L +   CNY +K +C+   +C
Sbjct: 2404 SLSFKELCNYLKKKICYILAWC 2425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,060
Number of Sequences: 5004
Number of extensions: 9046
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)