Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e03
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.003
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.13
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 30 0.31
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 29 0.72
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.95
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 28 1.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 2.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.9
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 27 2.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 3.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 3.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 6.7
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 26 6.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.7
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 26 6.7
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 8.8
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 8.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 438 QVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSDQTPKSQDHDDNNRCTE 608
Q P S+ +I + + +Y+++E+ ++ + P S+P DQ S+ D+N E
Sbjct: 351 QKPGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEE 407
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 396 ENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSDQTPKS 575
E+ S S + + + SSS S + +ESE +V+ KT E SS+ S +
Sbjct: 88 ESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESE 147
Query: 576 QDHD 587
++ +
Sbjct: 148 EEEE 151
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 VLYKTSEN-NFPSSDPSDQTPKSQDHDDNNRCTEVSRVD 623
+LY T + P P+D T DHD NN E D
Sbjct: 237 ILYSTEDGFELPPDQPADLTTALTDHDTNNVAEEAQMTD 275
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 432 LKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSDQTPKSQDHDDNNRCTE 608
L+++ S Q QG++ S ++ K S+ P S P+ SQD N++ TE
Sbjct: 97 LRKIQDSLIRQRTTMRQGRFPSSSSEFPPKNSKYQLPGSMPNTGASSSQDPFTNSQSTE 155
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 28.7 bits (61), Expect = 0.95
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 357 NEATRHCQDISYLENISKPS-SNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSEN 533
+E C DI LEN K ++ KQ+ + + + S+ + NE+E L + SE+
Sbjct: 418 DEVKSICGDI--LENRWKSLLQEISSQKQLSTDASQTQDASIANE-NETEIASLDEGSES 474
Query: 534 NFPSSDPSDQTPKSQDHDDN 593
S P++Q + ++DN
Sbjct: 475 KPTPSPPAEQLTDQKQNEDN 494
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 423 VTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTS--ENNFPSSDPSD 560
VT+++++ ++ K++++ Q + E K+LYK++ + PS SD
Sbjct: 18 VTKIRKLTAAKKNELQNRKCNQASNEEKKILYKSNFLDRFIPSKANSD 65
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 453 SKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSDQTPKSQDH 584
S ++ + Q + NESE + +T N P PS + PK D+
Sbjct: 212 SDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVPKLPDN 255
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 157 YSAFHNNHSGNHKPKFLTWLFHVS 86
Y F N + H + L+WLFH+S
Sbjct: 558 YEGFQNYYYSCHNGRKLSWLFHLS 581
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 447 SSSKHQIEQSVQGQYNESEAKVLYKTSEN 533
SSS+ EQ +Q +E + Y TSEN
Sbjct: 1173 SSSERSNEQDIQNNLDEDTVSLAYGTSEN 1201
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 456 KH-QIEQSVQGQYNESEAKVLYKTS----ENNFPSSDPSDQTPKSQD 581
KH +I Q + G+ E +A+ K S ENN P S PSD ++
Sbjct: 246 KHPEIYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSDNASNPEE 292
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +3
Query: 315 TDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYN 494
T + +Q LN T +S +EN SKPS+ + S++HQI+ G N
Sbjct: 60 TQRNRKFSSLQKHLNTETPSFS-VS-IENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSN 117
Query: 495 ESEAKVLYKTSENNFPSSDPSDQTPKSQDHDDN 593
+ + ++ + + D++ +D +D+
Sbjct: 118 -----LQMEGNDKELDTDNNEDESTTFKDEEDD 145
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +3
Query: 366 TRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPS 545
TR + S PSS+ + PSSS + S + + S + +S ++ S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKS 198
Query: 546 SDPSDQTPKS 575
S S + KS
Sbjct: 199 SSSSSSSSKS 208
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 456 KHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSD 560
KH S ++NES V YK +++ P S P D
Sbjct: 86 KHSCTPSFLRKFNESIENVSYKCLDHSPPDSVPGD 120
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 266 STQCTSKEIPYDAVPVLGTW*DTAAWSAQGHHQTS 162
ST C +P AV ++G + D WS+ H+ S
Sbjct: 201 STLCDMLPVPQFAVRLMGLYFDNVGWSSHIIHRPS 235
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 265 VPNARRKKFLMTRYLCLVRGEIRRRGVRKVITKRR*YSAFHNNHSG---NHKPKF 110
+P +++KF+ T +L + + + + +TKR+ Y +N + H PKF
Sbjct: 657 IPERKKEKFIRTVFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKF 711
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +3
Query: 357 NEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENN 536
+E++ D S + S+ S+ + +SS + + S +ESE+ + S++
Sbjct: 245 SESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESS--SEDSDST 302
Query: 537 FPSSDPSDQTPKSQDHDDNNRCTEVSRVDS 626
SSD SD + S+D + N T V +
Sbjct: 303 SSSSD-SDSSSSSEDGNSNTDTTTSGEVSA 331
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +3
Query: 402 ISKPSSNVTELKQVPSS---SKHQIEQSVQGQYNESEAKVLYKTSENN---FPSSDPSDQ 563
++ P++ E ++ +S ++ I+QS+ +Y + +KV K ++NN P D+
Sbjct: 296 VANPTAGELEFRKNKASRMTTQKHIDQSILDRYGDGTSKVKDKKAKNNEKEVPDLAILDK 355
Query: 564 TPKSQDHDDNNRCTE 608
+ KS+ + + +E
Sbjct: 356 SEKSKGESNTDEESE 370
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = +3
Query: 405 SKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSDQTPKSQDH 584
S PSS+ T PSSS S + S + +S ++ SS S + S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 585 DDNNRCTEVS 614
++ ++
Sbjct: 202 SSSSSSVPIT 211
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 339 GIQNQLNEAT--RHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKV 512
G+ + +E + RH S N + PSS++ K + +S Q++++ G N E
Sbjct: 433 GLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQLKKNPDG--NLVETSE 490
Query: 513 LYKTSENNFPSSDPSDQTPK 572
L + EN+ S+ S + K
Sbjct: 491 LSDSDENSVLSNKSSTLSKK 510
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 390 YLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAK---VLYKTSENNFPSSDPSD 560
Y+E++ P + P K++I +S + NE++ + + E N S
Sbjct: 4 YVEDVPMPDIGPDSVLNTPIRPKYEILKSKKKTQNENDPEPMDISMSPDEKNLKKSTVRR 63
Query: 561 QTPKSQDHDDNNRCTEVSR 617
+ KS+ + +N+ + +R
Sbjct: 64 KLRKSKPNSSSNQVSSRTR 82
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 146 KSTVSATFGDDLAHSTPPYLTTYQAQVPRHKEFLSTCIGYFITTIHKDK 292
K +V DDLA +TP L + Q+ K+ +S + T++K+K
Sbjct: 70 KQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSV-----VKTLYKEK 113
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 392 VANILA-MSGRFIQLILDATQSMSQVGDVDR 303
+ N+LA + IQ+ LD +++ +VG++DR
Sbjct: 424 LCNLLACQDNKIIQVALDGIENILRVGELDR 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,202
Number of Sequences: 5004
Number of extensions: 61677
Number of successful extensions: 239
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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