Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9e03
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0149 - 22733703-22736216 33 0.19
02_01_0402 - 2934074-2937217 31 0.99
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 31 1.3
02_01_0403 - 2938242-2941334 30 2.3
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 29 4.0
01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555 29 4.0
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 29 5.3
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 7.0
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 28 9.2
05_02_0127 - 6872780-6872835,6872943-6873026,6873501-6873784,687... 28 9.2
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.2
>05_05_0149 - 22733703-22736216
Length = 837
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Frame = +3
Query: 339 GIQNQLNEATRHCQDIS-YLENISKPS-SNVTELKQVPSSSKHQIEQSVQGQYNESEAKV 512
G QN E C +++ ++E + +P N + SS + + V QY + +
Sbjct: 393 GTQNIHKEMNAACSELAEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSD 452
Query: 513 LYKTSENNFPSSDPSDQTPKSQDHDDNN 596
S+N D + P Q H D N
Sbjct: 453 SIDGSKNEVEKQDKGSEGPLVQQHPDTN 480
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 309 NVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKH 461
N+T LR + QL+E + + +S+L + +N+T Q+ SSK+
Sbjct: 373 NLTALRLSFNNFRGQLSEKIGNLKSLSFLSLVKNSLANITSTLQMLQSSKN 423
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 663 LIYSFFSSCAMFCYLHATLQCNGYCHHDPDFWASDHLDLNSESYS 529
L+Y F + ++F LHA GY DP+++ + L+ S+ YS
Sbjct: 657 LVYDFIPNGSLFGTLHADASTFGYL--DPEYYHTGQLNKKSDVYS 699
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 309 NVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKH 461
N+T LR G QL+E + Q +S+L ++ +N+T QV S ++
Sbjct: 357 NLTALRLSYNGFHGQLSERIGNLQYLSFLSIVNISLTNITRTIQVLQSCRN 407
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 417 SNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTS-ENNFPSSDP---SDQTPKSQDH 584
S+++E +VPSSS H E S GQ +S + +S PSS S Q P S
Sbjct: 419 SSISEDLEVPSSSSHASEPSSSGQAKKSSESLPADSSLSRKVPSSGEYVNSSQGPGSSTS 478
Query: 585 DDNNR 599
+ R
Sbjct: 479 STSER 483
>01_05_0613 - 23659388-23659813,23659924-23660308,23660482-23660555
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 594 YCHHDPDFWASDHLDLNSESYS 529
+ HHDPD W SD + E +S
Sbjct: 198 FIHHDPDSWGSDVHEFKPERFS 219
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 594 YCHHDPDFWASDHLDLNSESYS 529
+ HHDPD W SD + E ++
Sbjct: 395 FIHHDPDIWGSDVNEFKPERFA 416
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 594 YCHHDPDFWASDHLDLNSESYS 529
+ HHDP+ W SD + E +S
Sbjct: 446 FIHHDPEIWGSDVHEFKPERFS 467
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 472 KVYRDN-ITKAKLKYSTKHRRITFRVQIQVIRRPKVR 579
KV RD+ IT K KYS + + +R +IQ+I+R V+
Sbjct: 658 KVERDSQITGDKKKYSIRDSQENWRQKIQIIQRVAVK 694
>05_02_0127 -
6872780-6872835,6872943-6873026,6873501-6873784,
6874403-6874568,6876724-6876906,6877400-6877505,
6877620-6877775,6878882-6878899
Length = 350
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 125 IT*MIIVKSTVSATFGDDLAHSTP 196
I+ M + STV+ATFGDDL + P
Sbjct: 248 ISGMDVDASTVNATFGDDLGNGGP 271
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +3
Query: 354 LNEATRHC-------QDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKV 512
L ATRHC D+ + + +S + ++ ++ I+ V+G N+ V
Sbjct: 576 LQLATRHCFILEDPPSDVKDMSGNASTTSTDGDKRKDKDKTQDSIDSEVEG-INKKGETV 634
Query: 513 LYKTSENNFPSSDPSDQTPKSQDHDDNNRCTEVSRVD 623
L + + P S PK QD D + C E VD
Sbjct: 635 LSVEGKKSSPIS------PKGQDTDKKDECDEDPSVD 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,542
Number of Sequences: 37544
Number of extensions: 363727
Number of successful extensions: 904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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