Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9e03
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    33   0.29 
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin...    29   2.7  
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin...    29   2.7  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    29   3.6  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    28   6.2  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    28   6.2  
AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +3

Query: 402  ISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSD 560
            IS     + +L+      +H I+QS++GQ NE+E + ++++ ++ F  +D S+
Sbjct: 1144 ISDDLDYLLQLEAFYHLGEHIIKQSLRGQENENEKQEMFRSDDDTFLPTDSSN 1196


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 381 DISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSD 560
           +IS  E++SKPS + +  K+  + S+   E     + NE + K   K    N P +D SD
Sbjct: 366 EISDNEDVSKPSCSTS--KKTTNRSRDSSESDNDSRDNELQKKKR-KMKRKNVPKTDGSD 422

Query: 561 QTPKSQDHD 587
            + +S D D
Sbjct: 423 VSNESFDED 431


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 378 QDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPS 557
           +D   LE+   PS+ +  +++V           +  Q +ES+ + + +TSE + P SD  
Sbjct: 158 EDGEGLESKPGPSTEMILVEKVEEEEAKVTVSDINMQASESKIEGIEQTSEVDIPKSDED 217

Query: 558 DQTPKSQD 581
            Q+ ++ D
Sbjct: 218 HQSTEAYD 225


>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical
           protein H39E23.1c protein.
          Length = 1062

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 473 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 511


>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 507 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 545


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 603 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 641


>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical
           protein H39E23.1c protein.
          Length = 1062

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 473 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 511


>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 507 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 545


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 603 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 641


>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1096

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 507 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 545


>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 330 RLGGIQNQLNEATRHCQDISYLENIS-KPSSNVTELKQVP 446
           R GG+Q +    +R    IS L+  S KPSSN T++ Q+P
Sbjct: 603 RHGGVQMRAQPTSRQAT-ISLLQPPSYKPSSNTTQIAQIP 641


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 545 TRKVILRCFVEYFSFAFVILSLYTLFYLMF 456
           TR+     F+ +F F F   +++ LFY++F
Sbjct: 37  TRRCFSAYFLNFFQFIFFFFNIFQLFYVVF 66


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/84 (22%), Positives = 30/84 (35%)
 Frame = +3

Query: 345 QNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKT 524
           QN       H Q    L  + +      E+     ++     QS     NE++ K     
Sbjct: 102 QNSATTPNYHNQPQMQLTPLQQAKPEKEEISPYAINNILSSTQSSPDNGNEADDKENSSV 161

Query: 525 SENNFPSSDPSDQTPKSQDHDDNN 596
             N FP+S  S + P+   +D  N
Sbjct: 162 RRNTFPASSASTKKPRGTPYDRTN 185


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/84 (22%), Positives = 30/84 (35%)
 Frame = +3

Query: 345 QNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKT 524
           QN       H Q    L  + +      E+     ++     QS     NE++ K     
Sbjct: 98  QNSATTPNYHNQPQMQLTPLQQAKPEKEEISPYAINNILSSTQSSPDNGNEADDKENSSV 157

Query: 525 SENNFPSSDPSDQTPKSQDHDDNN 596
             N FP+S  S + P+   +D  N
Sbjct: 158 RRNTFPASSASTKKPRGTPYDRTN 181


>AF098989-2|AAK18954.3|  346|Caenorhabditis elegans Hypothetical
           protein F47G6.3 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/71 (21%), Positives = 31/71 (43%)
 Frame = +3

Query: 360 EATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNF 539
           ++T+   ++S  E   KP S V   +++PSS +       +G   +  +K + +  +   
Sbjct: 14  DSTQQSDELSQKEPRPKPKSKVQTAERIPSSKRRSKSGKKRGTKEKERSKEVDELPKTAG 73

Query: 540 PSSDPSDQTPK 572
               P+   PK
Sbjct: 74  SVMSPAPNPPK 84


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 378 QDISYLENISKP--SSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSD 551
           +D   LE+ISK   S + +E  Q+P S   QI+  ++    ESE   +   S  +    +
Sbjct: 382 EDDEPLEDISKATDSPHSSEKSQIPGSPGSQIKNPLKPSSTESE--TIGPESSESEDDGE 439

Query: 552 PSDQTPKSQDHD 587
            S  TP+ ++ +
Sbjct: 440 RSTPTPQEEEEE 451


>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 481 RDNITKA-KLKYSTKHRRITFRVQIQVIRRP 570
           R+N  K  ++K  T +  ITF+V  Q+IRRP
Sbjct: 121 RENNRKILRIKIRTSNDTITFKVDDQIIRRP 151


>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 319 SVTLIAILELIFMDGCDEVPNARRKKFLMTRYLCLVRGEIRRRGVRKVITKR 164
           S++L++ + + F DG +    A     L  R LCL++GE R R    ++ ++
Sbjct: 248 SISLLSDVVMEFKDGANSARIA--PVLLKARSLCLIQGESRYRWKHGIVNRK 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,085
Number of Sequences: 27780
Number of extensions: 339299
Number of successful extensions: 1043
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)