Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9d21
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 36 0.006
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 31 0.14
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 30 0.32
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 0.74
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 0.74
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 1.7
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 27 2.3
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 2.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 3.0
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 3.0
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 4.0
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.0
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 4.0
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 5.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.2
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 5.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 5.2
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 25 6.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 9.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 9.1
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 9.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.1
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.1
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 35.5 bits (78), Expect = 0.006
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +1
Query: 310 IMCCKYTEDVNEIATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAH 489
+ C + D + IATG D TIR + G+ + D R + P+ A+ +P+ A
Sbjct: 180 VSCVAWAPDASIIATGSMDNTIRFWDPKKGS----PIGDALRRHTKPIMALCWQPLHLAP 235
Query: 490 PITNTLLSS-YVNGCIKCWKYKYDQCLYTI 576
LL+S + ++ W K L+T+
Sbjct: 236 DSGPYLLASGSKDNTVRIWNVKLRTLLFTL 265
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +1
Query: 340 NEIATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAHPITNTLLSSY 519
N I + D TIR++ DG C H+L R ++ +H S A+ T+ S+
Sbjct: 281 NWIYSSSYDKTIRIWDAKDGKCLHILKGHAARVNHLSLST-EHVLRSGAYDHTDFKPKSF 339
Query: 520 VNGCIKCWKYKYDQCL 567
+ K K +Y+ CL
Sbjct: 340 SDERRKA-KERYEACL 354
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 496 TNTLLSSYVNGCIKCWKYKYDQCLYTIR-EKRQILGLNYHPRFSKIY 633
TNT SS ++G +K W + +T++ R + +NY+P K Y
Sbjct: 154 TNTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPY 200
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 133 ARKSFAVTNTYIRNAPPTKEI--VSVHTSMPNVEHRSFPLEQNQVYQGQVNVL 285
+R+ + + + +I PTK++ S TS+ NVEH ++ ++G +NV+
Sbjct: 226 SREDWPIISKHISLIVPTKKVNTTSAQTSLNNVEHDLISKIMSRSFKGGINVV 278
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 28.7 bits (61), Expect = 0.74
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 346 IATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAHPITNTLLSSYVN 525
+ +G D TI+++S TC H ++ GPV ++ + L S ++
Sbjct: 407 VLSGSDDSTIKIWSLETNTCLHTF-----SAHIGPVQSLALAD--------SRLFSCSLD 453
Query: 526 GCIKCWKYKYDQCLYTI 576
G IK W + +C++T+
Sbjct: 454 GTIKQWDIEKKKCVHTL 470
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 0.74
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 346 IATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAHPITNTLLSSYVN 525
+ +G D T+R+++ DGTC +L ++ P+ ++ +S + T +SY +
Sbjct: 153 LVSGSWDETVRIWNLQDGTCLRML-----PAHSEPIISVS---ISADGTLCAT--ASY-D 201
Query: 526 GCIKCWKYKYDQCLYTIRE 582
G + W QCL T+ E
Sbjct: 202 GMARIWDVLSGQCLKTLVE 220
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 304 KEIMCCKYTEDVNEIATGFTDGTIRLFS 387
K + C + + IAT +DGTI+++S
Sbjct: 55 KSVTCVSVSPNKRWIATSSSDGTIKIWS 82
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 307 EIMCCKYTEDVNEIATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKH 468
+I +Y ED + +A+G D +RL+ C + + + V + + + +H
Sbjct: 100 QINTIRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLADAKDSVSSIDIAEH 153
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 346 IATGFTDGTIRLFSCNDGT 402
I TG TDGT+R + GT
Sbjct: 155 IVTGSTDGTLRTYDIRKGT 173
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 196 VSVHTSMPNVEHRSFPLEQNQVYQGQVNVLSVIDTNKEIMC 318
V++H +H SFPL N G+ + ++ D K C
Sbjct: 458 VTIHNVSTIGKHPSFPLSNNGELIGEFTLSNITDVEKVCAC 498
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/89 (19%), Positives = 40/89 (44%)
Frame = +1
Query: 310 IMCCKYTEDVNEIATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAH 489
+ C + ++A+G D TIR+++ + C L + G + + + +S+
Sbjct: 510 VWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTL-----EGHTGAILKLIY--ISQG- 561
Query: 490 PITNTLLSSYVNGCIKCWKYKYDQCLYTI 576
++S+ +G +K W +C+ T+
Sbjct: 562 ---TQVVSAAADGLVKVWSLSSGECVATL 587
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 346 IATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVS 480
I + DGT+R++ + G C H+L R Y + + + +S
Sbjct: 590 IVSASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTINPSRQQCIS 634
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 478 SKAHPITNTLLSSYVNGCIKCWKYKYDQCLYTIREKRQI 594
S+ + T L+ YVN C + DQ LYT +E+ ++
Sbjct: 200 SRTYSGTKKLVEDYVNELKVCLETVIDQRLYTAQERSKM 238
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.0
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Frame = +1
Query: 310 IMCCKYTEDVNEIATGFTDGTIRLFSC-----NDGTCTHLLVDDECRSYPGPVTAIKHRP 474
++C + + I +G DGTIR +S +D L + + V +
Sbjct: 342 VLCVCVPKATHHIFSGGHDGTIRCWSLPANQTSDSISKILTGSTIFQGHEDCVWELFCHE 401
Query: 475 VSKAHPITNTLLSSYVNGCIKCWKYKYDQCLYTIR-EKRQILGLN 606
V +PI LLS +G ++ WKY +Q L+ IR + +Q L ++
Sbjct: 402 VKDNNPI---LLSLSSDGTVRGWKYTGEQ-LFKIRCDSKQPLSMS 442
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 343 EIATGFTDGTIRLFSCNDGTCTHLLVDDECRSYPGPVTAIKHRPVSKAHPITNTLLSSYV 522
EIAT D T+RL++ ND T T+ R I VS A+PI + +
Sbjct: 250 EIATVSEDLTLRLWTWNDKTLTNTYTYTGHRG-----KHIWSLVVSSANPI---IYTGGN 301
Query: 523 NGCIKCWKYK 552
+G ++ W YK
Sbjct: 302 DGSVRSWDYK 311
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +1
Query: 469 RPVSKAHPITNTLLSSYVNGCI--KCWKYKY----DQCLYTIREKRQIL 597
R V + H +TN + + + C K KY Y D +Y I ++R+++
Sbjct: 885 RSVEEVHDVTNAIATQFPFACFDSKVEKYSYIDDGDLVVYEIAKRRKVV 933
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 511 SSYVNGCIKCWKYKYDQCLYTI 576
S + N + WKYK D C+ T+
Sbjct: 616 SKHTNALDEHWKYKLDSCVSTL 637
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.2
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Frame = +1
Query: 256 QVYQGQVNVLSV-IDTNKE-IMCCKYTEDVNEIATGFTDGTIRLFSCNDGTCTHLLVDD- 426
Q++ VL ++ +KE + K E N + +G D T+R+++ CTH+
Sbjct: 374 QIHNAITGVLEARLEGHKEGVWAVKIHE--NTLVSGSIDKTVRVWNIEKAKCTHIFRGHI 431
Query: 427 ---ECRSYPGPVTAIKHRPVSKAHPITNTLLSSYVNGCIKCWK 546
C P I+H V P ++S + ++ WK
Sbjct: 432 SIIRCLEILVPSRLIRH-GVEIVEPDQPYIVSGSRDHTLRVWK 473
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 487 HPITNTLLSSYVNGCIKCWKYKYDQCLYTIRE 582
+P+ + LLS+ V G IK W +C+ T E
Sbjct: 238 NPVGDLLLSADVEGKIKIWDIDTMECISTQSE 269
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -2
Query: 467 CLIAVTGPGYERHSSSTSKCVQVPSLQLNNLIVPS---VKPVAI-SFTSSVYLQHIISLF 300
CLI+V G+ + + + P+L+ + L + S +K +AI SF S V++ ++L+
Sbjct: 358 CLISVVRTGFRSNKGQLIRNLLYPNLRPSQLYLDSMSFLKTMAILSFVSIVFIAIYLNLY 417
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 319 CKYTEDVNEIATGFTDGTIRLFSCNDGTCTHLLV 420
C + D + + D TIRL+ G CTH V
Sbjct: 69 CALSFDSHYALSASWDKTIRLWDLEKGECTHQFV 102
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 487 HPITNTLLSSYVNGCIKCWKYKYDQCLYTI-REKRQILGLNYHP 615
HP +L+S NG I+ W Y+ L + G+ +HP
Sbjct: 20 HPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHP 63
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 493 ITNTLLSSYVN-GCIKCWKYKY 555
+T T+LSS + GC++ WK Y
Sbjct: 299 VTGTILSSSGDDGCVRLWKASY 320
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 148 AVTNTYIRNAPPTKEIVSVHTSMPNVEHRSFPLEQNQ 258
AV++T + +APP + S+P + F ++ N+
Sbjct: 593 AVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLIKHNK 629
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 334 DVNEIATGFTDGTIRLFS 387
D + IATG DGTIR++S
Sbjct: 29 DGSRIATGGLDGTIRIWS 46
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 124 YWSVPLVRLKLFASVPL*NLLFKITD 47
+W VPL+ +K+ A + +L +KIT+
Sbjct: 414 HWVVPLIDIKMEARQSIADLSYKITN 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,456
Number of Sequences: 5004
Number of extensions: 50961
Number of successful extensions: 183
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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