Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d20
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    24   7.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   9.2  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    23   9.2  

>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 127 RSISNRYLPPRYMDTMMAPTK 65
           R + N+Y+PP Y  ++  P K
Sbjct: 4   RKVLNKYIPPDYDPSIRPPKK 24


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 118 SNRYLPPRYMD 86
           +N YLPP YMD
Sbjct: 472 NNSYLPPSYMD 482


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 172 QPRPVKFAIGTSLFIRSISNRYLPPRY 92
           +PRP ++  G  +  RS+ +R  P RY
Sbjct: 479 EPRPNEWIPGLEILHRSVLSRLNPLRY 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,701
Number of Sequences: 5004
Number of extensions: 19056
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)