Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d20
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical pr...    25   10.0 
DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding p...    25   10.0 

>U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical
           protein F13D11.4 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 119 NGPYEQ*RAYGEFNWSRLRNTLF*CYV 199
           N  Y Q R + E +WS L + +  CY+
Sbjct: 129 NEGYTQDRVFDEDSWSNLESDMVDCYI 155


>Z36238-4|CAD82915.1|  286|Caenorhabditis elegans Hypothetical
           protein R74.5b protein.
          Length = 286

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 ISNRYLPPRYMDTMMAPTKSALLS 50
           ++ ++L PR+   MM PT +A +S
Sbjct: 100 LAQQFLVPRHQQLMMPPTSAAAIS 123


>Z36238-3|CAA85276.1|  404|Caenorhabditis elegans Hypothetical
           protein R74.5a protein.
          Length = 404

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 ISNRYLPPRYMDTMMAPTKSALLS 50
           ++ ++L PR+   MM PT +A +S
Sbjct: 218 LAQQFLVPRHQQLMMPPTSAAAIS 241


>DQ485531-1|ABF22491.1|  404|Caenorhabditis elegans RNA-binding
           protein ASD-1 protein.
          Length = 404

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 121 ISNRYLPPRYMDTMMAPTKSALLS 50
           ++ ++L PR+   MM PT +A +S
Sbjct: 218 LAQQFLVPRHQQLMMPPTSAAAIS 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,823
Number of Sequences: 27780
Number of extensions: 102539
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)