Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d18
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   1.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.6  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   2.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.5  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 150 AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 263
           AA+ Q+ + + A   +D  A L  GEQY   VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 297  RPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 199
            + L+S+  +   L+SD+ V+P L +   S N Q
Sbjct: 1565 KALNSMQEFTSQLISDINVDPALFVQSTSVNTQ 1597


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 VARKAARDLFASLSNGEQY 227
           V RK+ RDL  SLSNG  Y
Sbjct: 708 VERKSIRDLIQSLSNGRLY 726


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 414  FHYCLCDRQLVGQMVLMLVRHRLAHLPLLSYRRQENR 304
            FHYC C +   G M+   + H   H   +   +++ R
Sbjct: 1171 FHYCFCRQPEAGMMIECELCHEWYHAKCMKMSKKKLR 1207


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 189 RDLFASLSNGEQ-YITTVQLERRIREICN 272
           +D+   L+  E  Y TT++LE+R +EI N
Sbjct: 458 KDIAIRLNTAEYIYRTTIELEKRFQEISN 486


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = -3

Query: 384 VGQMVLMLVRHRLAHLPLLSYRRQENRCLRPLSSVTSYCKSLLSDVRVEPLLCIVHHSTN 205
           +GQ++ +  +  +  +   +Y    + C+     +  YC +LL D+  +  L ++H S +
Sbjct: 690 LGQIIGICAKDEVPEVRQSAYALLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSAS 749


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 493 STVKLRISSFEHLSGTSSSRSCEVRSVPL 407
           ST  L ISS   +SG+SS  S  + ++P+
Sbjct: 631 STSSLMISSSSIISGSSSILSSSISTIPI 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,361
Number of Sequences: 5004
Number of extensions: 38511
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)