Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d16
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    28   1.0  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    27   2.4  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   3.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    25   7.3  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   7.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   9.7  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   9.7  

>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
 Frame = +3

Query: 144 LYRREQHKL*THRSSN*TKSILGLFS*QAVKTWWGKSTLLHMFLEKLET------PRNT- 302
           LY R+  +   HR +     +  L   ++++T W K+     F EKL T      P+N  
Sbjct: 5   LYYRKLGRTSAHRQALLRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMAKRANPQNNR 64

Query: 303 --LVLEYSFGRKTNLKQAIDKNVCHIWEYGGKLDMLKNVLPVLPK-TKNYYYCIMVDLSK 473
             L     F ++T LK+  D  V     Y G+      +L + P+ T N    ++  +  
Sbjct: 65  KGLAEGMVFEKETTLKKVFDVLVP---RYNGRRCGYTRLLKLPPRSTDNAPMGVLEFVDG 121

Query: 474 PKTL-----LQTIEICL 509
           PK +      +T+ ICL
Sbjct: 122 PKDIRFHMTAKTVGICL 138


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 AAQIIDTQEQQLDEINSRTIFLAGSKNVVG*INT 259
           AAQ +D +E + DE    + +L  +K+ +  INT
Sbjct: 449 AAQFLDEREFETDEEEEESQYLLSTKDAINAINT 482


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 390 FHRIPKYDTRFYQLLA*DLFFFQMNILTQECSVEFLIFPKTYEAVLIYP 244
           FH  PK  TRF   L+  + FF +++L    ++ F I P++  A+   P
Sbjct: 353 FHWYPKSSTRFAVALSKHIIFFDLDLLN---NISFPI-PRSINAIQQLP 397


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 623 IILRKKGFKILKQVIFSTQNNQICYT 546
           ++ RKK  K++ Q+ F T   ++ YT
Sbjct: 176 LVFRKKVLKLVSQLSFMTDRKELVYT 201


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 351 IDKNVCHIWEYGGKLDMLKNVLPVLPKTKNYYYCIMV 461
           +++ V  ++E   +  MLK     +PKTK   +CI++
Sbjct: 164 LNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 372 IW-EYGGKLDMLKNVLPVLPKTKNYYYCIMVDLSKPKTLLQ 491
           +W  +G +L  L N    + +TKN  + ++  ++KP   LQ
Sbjct: 147 VWMSHGDRLSALPNGYETIGRTKNSPFAVIAHVTKPIIGLQ 187


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 465 LSKPKTLLQTIEICLHAINETQSISDNCVTNLI 563
           LS  K LL+ +  CL  + +  S S +CV +L+
Sbjct: 554 LSSCKNLLKVLWDCLDDVKDDLSSSTSCVMDLL 586


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 620 ILRKKGFKI--LKQVIFSTQNNQICYTVIGYRLCFINCMKTYFD 495
           I+ KK + +  L    F   NN   YTV  YR   +N   +Y D
Sbjct: 51  IMAKKEYSLRALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYID 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,945
Number of Sequences: 5004
Number of extensions: 56936
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)