Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d16
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812...    29   3.3  
04_04_0500 - 25677767-25680850                                         29   4.3  
03_02_0189 - 6253659-6255380                                           28   7.6  

>05_05_0387 +
           24577448-24577638,24580375-24580767,24581078-24581208,
           24581460-24581899
          Length = 384

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +3

Query: 234 KTWWGKSTLLHMFLEKLETPRNTLVLE-YSFGRKTNLKQAIDKNVCHIWEYGGKLDMLKN 410
           + W     L+   L +L+ P++ L L  +  G     K+ I K+  +  E+G  L +L N
Sbjct: 160 RKWEVDEPLIRSRLSELKNPKDPLWLAVFPEGTDYTEKKCI-KSQEYAKEHG--LPILNN 216

Query: 411 VLPVLPKTKNYYYCI 455
           VL  LPKTK ++ C+
Sbjct: 217 VL--LPKTKGFHCCL 229


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +2

Query: 95  QIGNQIYFK*IRYKMLSIPERAAQIIDTQEQQLDEINSRTIFLAGSKNVVG*INTASYVF 274
           + G QI+   I+Y + S     + +ID   +  D  +SR IF     + +  IN  + + 
Sbjct: 544 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPIN--ALIA 601

Query: 275 GKIRNSTEHSCVRIF 319
           G ++N+ E   +++F
Sbjct: 602 GFVQNNNEDEAIQLF 616


>03_02_0189 - 6253659-6255380
          Length = 573

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 423 LPKTKNYYYCIMVDLSKPKTLLQTIEICLHAINETQSI 536
           LP +  +YYCI    SK +  + T+  C+HA+ E Q++
Sbjct: 402 LPPSLEHYYCI----SKAQHKVDTLRRCIHAL-EAQTV 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,900
Number of Sequences: 37544
Number of extensions: 289818
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)