Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d15
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    31   0.088
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    31   0.15 
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    29   0.47 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   1.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   2.5  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   4.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   5.8  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   5.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.8  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    25   5.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   5.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   7.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.7  

>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 305 EHDEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFK 484
           + D   V+  +LS T   +   T   L   E+ + + V++ L+ DE   ISL  N+KF +
Sbjct: 330 DFDGNEVKSEELSQTVKVESQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSE 389

Query: 485 TTV 493
             V
Sbjct: 390 EEV 392


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 287 KYYERYEHD-EVPVRESDLSATTDKDVILTNSELDKIEKRVYE-TVSQELQ 433
           K+YE++ HD  +P+    L+  TDK+  +   +   + K++Y  T +  LQ
Sbjct: 567 KWYEKWFHDLNIPLLRKCLTLRTDKNPFIEQPDEPNVTKKIYRVTYTDALQ 617


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +2

Query: 287 KYYERYEHDEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDS 466
           KY+E   H  V    SD+S +++        +L K+EK++ ++VS+  QTD+      + 
Sbjct: 232 KYFENQLH-LVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVSKTSQTDKD-----ED 285

Query: 467 NIKFFKTTVEKL 502
           N+ F K  + ++
Sbjct: 286 NLDFTKNLLTRI 297


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 368 LTNSELDKIEKRVYETVSQELQTDESSSISLDSN 469
           LTN +LD  EK +   +S    T++SSS+ LDS+
Sbjct: 129 LTNEQLDTNEKYLQSALSYTQPTEDSSSL-LDSD 161


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 368  LTNSELDKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFY 517
            +T  + DKI  ++ E   Q  + ++  ++     + F K T E  F N Y
Sbjct: 1019 MTLEKFDKISDQILEIAMQSRKENDGRTLKQVIQLTFEKATDEPNFSNMY 1068


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 311 DEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSIS 457
           DE+ + E  LS  TD  V LT SEL  I  R    V ++L+  +   I+
Sbjct: 291 DELHLTEEVLSFLTDDPVTLTASELTDINFRQELDVIRQLEQQKFVEIA 339


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +2

Query: 287 KYYERYEHDEVPVRESDLSATTDKDVILTNSELDKIEKRVYETVSQELQTDESSSISLDS 466
           K+Y     +E  ++E+DL    D        +  + E R  +   + L+ D+     ++ 
Sbjct: 146 KHYREASDNEEDLKETDLYGDRDSFQSRLKQKKQRSEFRASKREMERLERDQELRNKIEE 205

Query: 467 NIKFFKTTVEKLFE 508
             K    T+EKL E
Sbjct: 206 RNKKELETIEKLRE 219


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 302 YEHDEVPVRESDLSATTD--KDVILTNSELDKIEKRVYETV 418
           YE D+  V  ++   T D  +D+     E +K+E RVY+ V
Sbjct: 643 YEEDDEDVEAAEKFYTNDIQRDLAKKALECNKLENRVYDLV 683


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 395 EKRVYETVSQELQTDES-SSISLDSNIKFFKTTVEKLFENFYT 520
           EKR YE+ + E + +ES +SI L      F    + L E+ +T
Sbjct: 369 EKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNLVESVFT 411


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 302 IVRNTLEMNTRGTVRNFSKRSHLN 231
           ++R++  +NTR T RNFS  S  N
Sbjct: 726 LIRSSYALNTRKTRRNFSHSSASN 749


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 334 GFPNGHFIVLISFVIL 287
           GF NG F+VLISF I+
Sbjct: 420 GFTNGIFLVLISFSIV 435


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 431 QTDESSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQR 553
           + DESS    +SNI+  +  ++  +ENF    RD  + K R
Sbjct: 122 ERDESSKKLRESNIEKARKAIDDFYENF-NDKRDKVIAKSR 161


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 443 SSSISLDSNIKFFKTTVEKLFENFYTSMRDFDLYKQRF 556
           + SIS   + +F   T E     F+    D D+Y Q+F
Sbjct: 483 TGSISCKESSEFSNQTTENSEMEFFDDRPDLDMYIQKF 520


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 386 DKIEKRVYETVSQELQTDESSSISLDSNIKFFKTTVEKLFENFY 517
           + I   + ET+ + L T   +   +   I  +   V  LFE FY
Sbjct: 446 NNIHAEILETIKRRLSTLAFTRTKIHDTIMQYPGLVHTLFEQFY 489


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 356 KDVILTNSELDKIEKRVYETVSQEL 430
           K + L  +ELDK+E+R+Y    Q +
Sbjct: 254 KAIKLKQTELDKLERRLYRPSPQNI 278


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 KTTVEKLFENFYTSMRDFDLY 544
           KT +EKL E  Y    D D+Y
Sbjct: 710 KTAIEKLLEKEYLEREDNDIY 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,234
Number of Sequences: 5004
Number of extensions: 33331
Number of successful extensions: 108
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)