Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d15
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   2.6  
06_01_0122 + 944353-944451,944547-945080                               27   7.8  
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256...    27   7.8  
01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452...    27   7.8  

>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = +3

Query: 207 VKERPSSLIQM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRMSY*QIQNS 386
           V E P S      +   P +  S  L S  + + T   P+G+     PP +    Q+   
Sbjct: 692 VSESPPSNSIGYFYGSTPENHRSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEK 751

Query: 387 TKSKREFMRLFHKNCKPTRAHLSVS-TRT*NSLRRL*KSYLR 509
            K +++    F   C   R  L +  +   NSL R    YLR
Sbjct: 752 NKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFWSYYLR 793


>06_01_0122 + 944353-944451,944547-945080
          Length = 210

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 372 VSMTSLSVVALKSDSLTGTSSCSYRS*YFGD---EYSWDCEELFETFTSELKTM 220
           V  ++L    ++S  LT +  C+Y   +  D   +YS + E+LF+   +ELK M
Sbjct: 37  VGSSNLESHEIESSDLTLSRYCAYLVVFQPDLLPDYSENAEDLFQDMKTELKDM 90


>02_01_0356 +
           2563773-2563898,2564031-2564131,2564375-2564498,
           2564592-2564651,2564762-2564829,2565520-2565562,
           2566026-2566091,2566237-2566275,2566375-2566457,
           2566654-2566765,2566840-2566923,2567026-2567184,
           2567268-2567372,2567451-2567555,2567661-2567801,
           2567920-2568024,2568111-2568335,2568762-2568875,
           2568963-2569178,2569674-2569733,2569827-2569940,
           2570047-2570132,2570211-2570319,2570408-2570586,
           2570673-2570741,2570792-2571005
          Length = 968

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 287 KYYERYEHDEVPVRESDLSATTDKDVILTNSE-LDK-IEKRVYETVSQELQTDESSSISL 460
           K+ ++ E  +  + E DL+     ++ +  ++  D  ++K   E++ QE+++  SS  S+
Sbjct: 30  KWKKKDEKKDDDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSV 89

Query: 461 DSNIKFFKTTVEKLFENFYTSMRDFDL 541
              +KF +     L   F T     DL
Sbjct: 90  PKPLKFLRPHYGTLKSYFETMPESSDL 116


>01_04_0120 +
           16242220-16242483,16242538-16243424,16244604-16245264,
           16245582-16245943,16246071-16246140,16246666-16246740
          Length = 772

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +3

Query: 189 TVSVLHVKERPSSLI--QM*TFRKVPHSPTSIHLQSITNDMSTMKCPLGNPI*VLPPIRM 362
           T  V+ + E  S+LI  ++   +K P  PT I             C LG  I V+P +  
Sbjct: 319 TTEVVKLTEHCSNLILHKLPEKKKDPGCPT-ITCSIRAQQFDQALCDLGASISVMPKLTS 377

Query: 363 SY*QIQNSTKSKREFMRLFHKNCKPTRAHLSVSTRT 470
                 ++++ +R   RLF  +  P+  H   STR+
Sbjct: 378 L---TSSTSRIRRRLSRLFKGSGSPSSRHDESSTRS 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,333
Number of Sequences: 37544
Number of extensions: 185811
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)