Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d15
         (565 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    26   0.98 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   6.9  

>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 25.8 bits (54), Expect = 0.98
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 216 RPSSLIQM*TFRKVPHSPTSIHLQSITNDMSTMKCP 323
           RP  L Q  T+ +   +PT  H+ S+ +++S +  P
Sbjct: 544 RPEELFQPNTYNRFLVAPTGDHVISLIDEISYLSAP 579


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 347  TTDKDVILTNSELDKIEKRVYETVSQELQTDE 442
            TT+K + L ++  DK+E  V E   +  + DE
Sbjct: 918  TTEKRIRLVSATQDKLEDVVEELEGKNRERDE 949


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 140 LALKMPNACDLYLKTRHSFCSPRQRA 217
           LA  + NACD  L  R     PR+RA
Sbjct: 246 LASAIANACDTSLPRRKGGPYPRRRA 271


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,272
Number of Sequences: 2352
Number of extensions: 7308
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)