Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d13
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 214 SLNHPRYRQ 188
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 214 SLNHPRYRQ 188
           ++NHPRYRQ
Sbjct: 337 AINHPRYRQ 345


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 94  IKYINSNFLFVLVVLPPFKIFTAVLIV 14
           I++I + +L  L+   PF I+T V +V
Sbjct: 159 IRFILAAWLIALISAIPFAIYTKVNLV 185


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 46   EAKQLKQIKNYYLYILFHNKTES*FESKMLEV 141
            E K L     Y LY+  HNK  S   S +L V
Sbjct: 1461 ELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSV 1492


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 46   EAKQLKQIKNYYLYILFHNKTES*FESKMLEV 141
            E K L     Y LY+  HNK  S   S +L V
Sbjct: 1457 ELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSV 1488


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +2

Query: 329 IWSCTINNKNICIL 370
           +W CT +  N+C +
Sbjct: 146 VWMCTASILNLCAI 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,950
Number of Sequences: 438
Number of extensions: 1553
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)