Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d12
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0214 + 13141213-13143741                                         29   4.1  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    28   7.2  
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    28   9.5  

>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 252
           A S+  N L N  +   +D+G SYL R   CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315


>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 624 RNQLFEKISSYLNLIEANHLQNHQSPKKSTNFRIVSLH--SYFTV-WF 758
           R  LFEKI   ++ +  +  Q    P+K  N ++  LH  S+F+V W+
Sbjct: 807 RPPLFEKIKELVSSVNVSGHQIFGDPEKLQNVKLCDLHPASWFSVAWY 854


>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 240 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 142
           EA+++   G +  I++IVAQ   +R  R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,106
Number of Sequences: 37544
Number of extensions: 335145
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)