Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d08
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P18931 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    41   0.032
UniRef50_Q6SKY4 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    34   2.8  

>UniRef50_P18931 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=185; Protostomia|Rep: NADH-ubiquinone oxidoreductase
           chain 4 - Drosophila melanogaster (Fruit fly)
          Length = 446

 Score = 40.7 bits (91), Expect = 0.032
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +3

Query: 438 YIFYCDIISFGLILLRI*ICSLMIIASE 521
           Y   CD++S+GLILL + ICSLM++ASE
Sbjct: 50  YFLGCDMLSYGLILLSLWICSLMLLASE 77


>UniRef50_Q6SKY4 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=3; Pancrustacea|Rep: NADH-ubiquinone oxidoreductase
           chain 4 - Speleonectes tulumensis
          Length = 445

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 438 YIFYCDIISFGLILLRI*ICSLMIIAS 518
           Y+F CDI+ F L+LL I I  LM++AS
Sbjct: 50  YLFGCDIMGFSLVLLSIWISMLMVMAS 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,780,839
Number of Sequences: 1657284
Number of extensions: 1685848
Number of successful extensions: 3376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3374
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)