Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d06
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3985| Best HMM Match : C2 (HMM E-Value=0)                           33   0.30 
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     29   3.7  

>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
          Length = 835

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 380 VMKCLAIIKFGEPQKNSIEIIYLVGVQRFCLQLKKSGSNPCWNEQQKIFI 529
           V K   ++K G   K+    I  +G Q+F  ++KK+  NP WNE  + F+
Sbjct: 376 VAKDFGVVKKG---KSDPYAILEIGAQKFRTKVKKNDLNPTWNETFEAFV 422


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 359 SHNNNREVMKCLAIIKFGEPQKNSIEIIYLVGVQRFCLQLKKSGSNPCWNEQQKIFI 529
           S ++  E   C  +    +P  +   I+  VG Q++  + KKS  +P W E  + FI
Sbjct: 279 SRSHRSEGSYCADMALLSKPTSDPYCIVE-VGAQKYRTKTKKSNCDPVWKETFEAFI 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,974
Number of Sequences: 59808
Number of extensions: 359561
Number of successful extensions: 796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)