Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d06
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = +3

Query: 576 IVYMLTVIIIIH----INSCFFVYYLYLFLIN 659
           I+Y++TV +II       S FFV+YL  FL+N
Sbjct: 16  ILYLITVYVIIKHWKKFKSSFFVWYLLDFLMN 47


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 576 IVYMLTVIIIIHINSCFFVYYLY 644
           ++ +  ++I+IHI + FF+YY +
Sbjct: 275 MIEVSNILIVIHIGTTFFIYYFF 297


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 591 TVIIIIHINSCFFVYYLYLFLIN 659
           T+ +I+ +  CFFV+Y+ +F +N
Sbjct: 253 TIPLIVDLFPCFFVWYMPIFKVN 275


>Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.5 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 132 IIIFASSIFITRCHSFSY*LSEGRSRMFSQSVPN 31
           +II  S +F   C+S+S  ++ GR   FS S+PN
Sbjct: 44  LIIMHSKVF---CNSYSMIVTYGRPTNFSSSIPN 74


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +3

Query: 579 VYMLTVIIII----HINSCFFVYYLYLFLIN 659
           +Y +TV+III    ++ S F+ +Y++ F+IN
Sbjct: 19  LYAVTVVIIILHWKNVKSSFYQFYIFEFIIN 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,283
Number of Sequences: 27780
Number of extensions: 293199
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)