Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d06
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   0.93 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.7  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 172 PASRQVNTSSNYANYNFCEFD-FYYAMSFFQ 83
           P S   N ++NY NYN   ++  YY +++ +
Sbjct: 87  PLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 71  ARAEAGCSLKVYRIRKIMYI 12
           A A AGC L +  +RK  Y+
Sbjct: 362 ALAPAGCDLTIDNLRKAKYL 381


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 40  TLREHPASALAQSVTERMTSRNKNRTRKNYNLRNY 144
           T RE        S     T  N N  + NYN  NY
Sbjct: 71  TERERSREPKIISSLSNRTIHNNNNYKYNYNNNNY 105


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 40  TLREHPASALAQSVTERMTSRNKNRTRKNYNLRNY 144
           T RE        S     T  N N  + NYN  NY
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 40  TLREHPASALAQSVTERMTSRNKNRTRKNYNLRNY 144
           T RE        S     T  N N  + NYN  NY
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 40  TLREHPASALAQSVTERMTSRNKNRTRKNYNLRNY 144
           T RE        S     T  N N  + NYN  NY
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 40  TLREHPASALAQSVTERMTSRNKNRTRKNYNLRNY 144
           T RE        S     T  N N  + NYN  NY
Sbjct: 304 TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNY 338


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 67  LAQSVTERMTSRNKNRTRKNYNLRNY 144
           +  S++ +    N N    NYN  NY
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,860
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)