Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9d02
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         30   1.8  
SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            28   7.3  

>SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 385 CTSSYISE**LHLLYPLKTIVEGSTPSTSWS*TFRRMYLNTPDLSMSTLGTLWSEPDI 212
           C   +IS    HL+  L  +V G    T WS    R++    DL+       W  PD+
Sbjct: 39  CRDRHISASYCHLVPRLSQLVRGQNNKTVWSFLDSRLHRKIADLNREIRRPYWEIPDL 96


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 315  EPSTIVLRGYKRCNYHSDIYDEVQGKLIPFDCEPWGGGRISHDPDNKKIHIYG 473
            +P+ +   G+  C  + DI+ E+Q +   FDC+     ++S   ++ K   YG
Sbjct: 992  QPAELCATGWHVCGTYGDIF-EIQNRTTGFDCQTASYAQLSAAINHCKTKAYG 1043


>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 519 VWLPPHGLPFHRPESIHRC---VSSYCLDHEIFYHHPKAHNQRGLIYLVPHHIYQSDSCI 349
           +W+ P G+    PES+H       ++C+ H +      A   +G  YL   H  Q+ SC+
Sbjct: 242 LWVAPDGISQFPPESLHVAEGFAKAFCIPHGL------AQLVKGFWYLDHKHFQQAVSCL 295

Query: 348 SY 343
            +
Sbjct: 296 VF 297


>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +3

Query: 132 LFSRPRVNNTKFWNPNLSGPILQFTTKMSGSLHKVPKVDIDKSGVFKYILLKVYDQEVDG 311
           LFS P  + T+ WN  +S      T ++  ++ +     +  +G+++   L +  Q  DG
Sbjct: 138 LFSIPEESETRLWNKYMSN-----TFELLSNMEQ----SVQDAGLYQGQTLVIEQQNEDG 188

Query: 312 VEPSTIVLRGYKRCNYHSDIYD 377
                    GY    Y S++YD
Sbjct: 189 SWQRQNTRSGYGSGRYWSNLYD 210


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 318 PSTIVLRGYKRCNYHSDIYDEVQGKLIPF 404
           P   V +  KRCNY  DI D ++ +  PF
Sbjct: 146 PLPAVAQLQKRCNYVMDILDSLRSRKAPF 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,822,156
Number of Sequences: 59808
Number of extensions: 454739
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)