Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c22
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    29   0.51 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   4.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   4.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   4.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.3  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 SMRGSVSQMYINPVPWQSTT*SSKKFFLHL*MEYFTLKK 362
           S+R  V    ++  PW ST+   +  +L L  EY TLK+
Sbjct: 415 SLRKEVWPFLLSVYPWDSTSEERRVIYLSLQEEYCTLKR 453


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 397 PKCVLNKYNLEIFFKVKYSIY 335
           PK    K+NL +F K KY+ Y
Sbjct: 488 PKLFFRKFNLSLFDKQKYANY 508


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 322  NFLDDHVVDCQGTGFMYICDTDPRILSSP*LSG 224
            NF+D +   C  T   ++ DTD  +LS    SG
Sbjct: 1138 NFVDIYFTSCSPTEVSFLSDTDICLLSKSQSSG 1170


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 121  VKQHVLLLKRNEDAQKVNVPIVTGYVPA 204
            +K++V LLK N   QKV V ++T  V A
Sbjct: 1535 LKRYVSLLKNNAIDQKVVVRLITAVVSA 1562


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +3

Query: 186 DWLRTSKNKPLPV-PLNQGELSMRGSVSQMYINPVPWQ 296
           DW       P P  P N G   M  + S  Y++  PWQ
Sbjct: 581 DWHGNPSTVPPPTNPYNPGYPYMDPNYSSGYVSQPPWQ 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,840
Number of Sequences: 5004
Number of extensions: 30710
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)