Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c22
         (496 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066354-1|AAH66354.1|  218|Homo sapiens chromosome 20 open read...    29   8.9  
AL121901-4|CAI14741.1|  254|Homo sapiens chromosome 20 open read...    29   8.9  
AL121901-3|CAI14742.1|  218|Homo sapiens chromosome 20 open read...    29   8.9  

>BC066354-1|AAH66354.1|  218|Homo sapiens chromosome 20 open reading
           frame 71 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 124 KQHVLLLKRNEDAQKVNVPIVTGYVPAKINLYLYHLIKEN 243
           ++ +++ K + +   V+V I+T  +P K+N +LY+L KEN
Sbjct: 121 RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNL-KEN 159


>AL121901-4|CAI14741.1|  254|Homo sapiens chromosome 20 open reading
           frame 71 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 124 KQHVLLLKRNEDAQKVNVPIVTGYVPAKINLYLYHLIKEN 243
           ++ +++ K + +   V+V I+T  +P K+N +LY+L KEN
Sbjct: 157 RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNL-KEN 195


>AL121901-3|CAI14742.1|  218|Homo sapiens chromosome 20 open reading
           frame 71 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = +1

Query: 124 KQHVLLLKRNEDAQKVNVPIVTGYVPAKINLYLYHLIKEN 243
           ++ +++ K + +   V+V I+T  +P K+N +LY+L KEN
Sbjct: 121 RRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNL-KEN 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,329,908
Number of Sequences: 237096
Number of extensions: 1034472
Number of successful extensions: 1361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)