Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c16
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   4.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   5.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.6  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 323 KRYSQFYSTTLMYISKCYFVFETSIGLY*IIVQFTVQDKNSKF 195
           KR+S+FY    ++++ C+  F T   LY     FT  D+NS F
Sbjct: 461 KRFSRFYYGHYVFVNTCHNFFLT---LY---QSFTEVDENSIF 497


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 QTI*L*SFKGLMTKCKLTIFILYCKLYNY 236
           QT  L  F GL+T     I  L+C  YNY
Sbjct: 162 QTFPLGKFVGLVTFSWSVIVFLHCCAYNY 190


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 23  MEENAYLFAEIGVAGISSFKKII*CSFVSIVYVKSFLDVLKVTDNLIIK 169
           MEE      +   + I ++K I  C F +I+ + +F  +   TD  +++
Sbjct: 1   MEEKRVKCKKKLTSTIGTWKYIQACIFFAIILISNFYGLKSFTDGFLLR 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,035
Number of Sequences: 5004
Number of extensions: 22268
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)