Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9c14
         (180 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   0.87 
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   0.87 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   2.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    19   6.1  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 0.87
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 169 VLLMFIDYDIYI 134
           + LMF+ Y+IY+
Sbjct: 188 IFLMFVSYNIYV 199


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 0.87
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 169 VLLMFIDYDIYI 134
           + LMF+ Y+IY+
Sbjct: 114 IFLMFVSYNIYV 125


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 142 IYILIVFLVFSVCEGSLGLS 83
           I+I+I  ++ SVC   +GL+
Sbjct: 501 IFIIIPVILTSVCYFMIGLN 520


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 142 IYILIVFLVFSVCEGSLGLS 83
           I+I+I   + SVC   +GL+
Sbjct: 501 IFIIIPVTLTSVCYFMIGLN 520


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,033
Number of Sequences: 336
Number of extensions: 238
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 39
effective length of database: 109,481
effective search space used:  2189620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)